Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D13
         (1306 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0105 - 836347-836769,837740-837937                              221   7e-58
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757...   219   3e-57
10_08_0890 + 21339976-21340198,21340293-21340402,21340652-213408...    29   8.1  

>03_01_0105 - 836347-836769,837740-837937
          Length = 206

 Score =  221 bits (541), Expect = 7e-58
 Identities = 99/176 (56%), Positives = 133/176 (75%)
 Frame = +1

Query: 364 RKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQKAAD 543
           RKV VP HR+ PLK++W+ I+TP+ EH+ + +R N K R VE+K   +T D++NLQK AD
Sbjct: 30  RKVPVPQHRFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRVELKTRQDTPDVSNLQKCAD 89

Query: 544 FVKAFIYGFEVXXXXXXXXXXXXFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRTKFTIE 723
           FV AF+ GF++            +V+SFE+KDVKTL G+HLSRAIGRL+GK G+TK+ IE
Sbjct: 90  FVHAFMLGFDIADAVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIE 149

Query: 724 NVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAER 891
           N T+TRIV+AD+KIHILGS+ NI +AR ++C+LI+GSP  KVY  LR V+ R+AER
Sbjct: 150 NSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSARLAER 205


>01_06_0969 -
           33472588-33474480,33475543-33475623,33475692-33475740,
           33475866-33476281,33477208-33477447
          Length = 892

 Score =  219 bits (536), Expect = 3e-57
 Identities = 98/175 (56%), Positives = 132/175 (75%)
 Frame = +1

Query: 364 RKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQKAAD 543
           RKV VP HR+ PLK++W+ I+TP+ EH+ + +R N K R VE+K   +T D++NLQK AD
Sbjct: 44  RKVPVPQHRFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRVELKTRQDTPDVSNLQKCAD 103

Query: 544 FVKAFIYGFEVXXXXXXXXXXXXFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRTKFTIE 723
           FV AF+ GF++            +V+SFE+KDVKTL G+HLSRAIGRL+GK G+TK+ IE
Sbjct: 104 FVHAFMLGFDIADAVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIE 163

Query: 724 NVTKTRIVLADSKIHILGSYQNIALARRAICNLIMGSPPSKVYGNLRNVANRVAE 888
           N T+TRIV+AD+KIHILGS+ NI +AR ++C+LI+GSP  KVY  LR V+ R+AE
Sbjct: 164 NSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSARLAE 218


>10_08_0890 +
           21339976-21340198,21340293-21340402,21340652-21340836,
           21341415-21341757
          Length = 286

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 379 PAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRN 483
           P  R+TP++ESW  I+     H  LQ  F+ + RN
Sbjct: 224 PTGRWTPMRESWGSIWRLDTNH-RLQAPFSIRIRN 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,761,859
Number of Sequences: 37544
Number of extensions: 586691
Number of successful extensions: 3342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3169
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4073878200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)