Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_D12
(1304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 166 5e-42
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 166 5e-42
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 106 6e-24
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 106 6e-24
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 106 6e-24
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 67 4e-12
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 39 0.002
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 38 0.003
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 36 0.009
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 29 1.9
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 28 2.5
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 7.5
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 166 bits (404), Expect = 5e-42
Identities = 81/132 (61%), Positives = 94/132 (71%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXX 298
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Query: 299 XXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVME 478
Y+TP LAVL++YKV+++G + RLRREC CGA FMA +
Sbjct: 77 GKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHK 134
Query: 479 DRHYCGKCHSTM 514
DR YCG+CH T+
Sbjct: 135 DRLYCGRCHLTL 146
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 70 MQIFVXXXTGKTITL 114
MQIFV TGKTITL
Sbjct: 1 MQIFVKTLTGKTITL 15
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 166 bits (404), Expect = 5e-42
Identities = 81/132 (61%), Positives = 94/132 (71%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXX 298
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Query: 299 XXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVME 478
Y+TP LAVL++YKV+++G + RLRREC CGA FMA +
Sbjct: 77 GKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHK 134
Query: 479 DRHYCGKCHSTM 514
DR YCG+CH T+
Sbjct: 135 DRLYCGRCHLTL 146
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 70 MQIFVXXXTGKTITL 114
MQIFV TGKTITL
Sbjct: 1 MQIFVKTLTGKTITL 15
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 106 bits (255), Expect = 6e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 70 MQIFVXXXTGKTITL 114
MQIFV TGKTITL
Sbjct: 1 MQIFVKTLTGKTITL 15
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 106 bits (255), Expect = 6e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 70 MQIFVXXXTGKTITL 114
MQIFV TGKTITL
Sbjct: 1 MQIFVKTLTGKTITL 15
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 106 bits (255), Expect = 6e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 106 bits (255), Expect = 6e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 93 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 106 bits (255), Expect = 6e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 169 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 106 bits (255), Expect = 6e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 245 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 106 bits (255), Expect = 6e-24
Identities = 50/54 (92%), Positives = 53/54 (98%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
VE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 321 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 70 MQIFVXXXTGKTITL 114
MQIFV TGKTITL
Sbjct: 1 MQIFVKTLTGKTITL 15
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 70 MQIFVXXXTGKTITL 114
MQIFV TGKTITL
Sbjct: 77 MQIFVKTLTGKTITL 91
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 70 MQIFVXXXTGKTITL 114
MQIFV TGKTITL
Sbjct: 153 MQIFVKTLTGKTITL 167
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 70 MQIFVXXXTGKTITL 114
MQIFV TGKTITL
Sbjct: 229 MQIFVKTLTGKTITL 243
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 70 MQIFVXXXTGKTITL 114
MQIFV TGKTITL
Sbjct: 305 MQIFVKTLTGKTITL 319
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 67.3 bits (157), Expect = 4e-12
Identities = 25/54 (46%), Positives = 41/54 (75%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 17 IDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/46 (36%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +2
Query: 128 SDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 262
+DT I +K KIQ ++ +Q+LI++G+ L D +T+ +YNI+++
Sbjct: 20 ADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 37.9 bits (84), Expect = 0.003
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
V+ ++ +K I I +QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 36.3 bits (80), Expect = 0.009
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 271
+EP++T +K ++ +PP +Q++I G QL+D L I+ +TL
Sbjct: 17 IEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 592 NPSYTAVASVPYRLEGTYLFVVVFEDHRAVTLPAV 488
NP+YT Y L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 260 PSGYCSPRGYVHLPAAFQRRSTSVDWEGF 174
PS + PRG V+ P+ +RR + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 374 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 532
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,629
Number of Sequences: 5004
Number of extensions: 44497
Number of successful extensions: 114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 713396902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -