Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D12
         (1304 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    112   2e-26
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    25   4.9  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  112 bits (269), Expect = 2e-26
 Identities = 53/54 (98%), Positives = 54/54 (100%)
 Frame = +2

Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
           VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 17  VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70



 Score =  112 bits (269), Expect = 2e-26
 Identities = 53/54 (98%), Positives = 54/54 (100%)
 Frame = +2

Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
           VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 93  VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146



 Score =  112 bits (269), Expect = 2e-26
 Identities = 53/54 (98%), Positives = 54/54 (100%)
 Frame = +2

Query: 119 VEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 280
           VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 169 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222



 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +1

Query: 70  MQIFVXXXTGKTITL 114
           MQIFV   TGKTITL
Sbjct: 1   MQIFVKTLTGKTITL 15



 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +1

Query: 70  MQIFVXXXTGKTITL 114
           MQIFV   TGKTITL
Sbjct: 77  MQIFVKTLTGKTITL 91



 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +1

Query: 70  MQIFVXXXTGKTITL 114
           MQIFV   TGKTITL
Sbjct: 153 MQIFVKTLTGKTITL 167


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 60  ESEDANLRKXXHGQDHH 110
           ESE  NLRK  H QD H
Sbjct: 50  ESEGGNLRKYPHFQDIH 66


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,628
Number of Sequences: 2352
Number of extensions: 12742
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 150418896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)