Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D11
         (1339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13070-17|AAC46636.2|  161|Caenorhabditis elegans Hypothetical p...    71   1e-12
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   2.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   2.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   2.4  

>U13070-17|AAC46636.2|  161|Caenorhabditis elegans Hypothetical
           protein F01F1.2 protein.
          Length = 161

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
 Frame = +2

Query: 191 EKSVLPPTFSAGPKGLGDPDDRRLRKVEIDVMIPKLIREKAKQEKCIEEVAQFEKCCK-D 367
           +K+++P   + GP GLGDP+DR LRK+E DV+IP  +  + ++  C E       C + D
Sbjct: 33  KKNIMPHYSAGGPHGLGDPEDRTLRKIEADVIIPNRMNTQIERVDCNESYLGLITCFRTD 92

Query: 368 ASLLMVVKCRSPNAALKDCLSNWYNNEEFKKICTEEYLKERSEYRRTGVKKAIRR 532
            ++  +  C+        C    +++  F+   T+EY+ ERS  R TG+    R+
Sbjct: 93  GAVSGLNTCKPALELFNRCKYEKFHDPAFRAKMTDEYIAERSAARATGMTSQQRK 147


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = -3

Query: 1043 PPXXGKPXXPPXGXXNPXPPXRXXGXXXVXGXGXGXGGPXXXPPXPGGWP 894
            PP  G P  PP     P             G     GGP   PP PGG P
Sbjct: 720  PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = -3

Query: 1043 PPXXGKPXXPPXGXXNPXPPXRXXGXXXVXGXGXGXGGPXXXPPXPGGWP 894
            PP  G P  PP     P             G     GGP   PP PGG P
Sbjct: 720  PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = -3

Query: 1043 PPXXGKPXXPPXGXXNPXPPXRXXGXXXVXGXGXGXGGPXXXPPXPGGWP 894
            PP  G P  PP     P             G     GGP   PP PGG P
Sbjct: 303  PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,272,538
Number of Sequences: 27780
Number of extensions: 385098
Number of successful extensions: 1303
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3756810758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)