Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D10
         (1280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         33   0.48 
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   4.5  
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    29   6.0  
12_01_0816 + 7502669-7503145                                           29   7.9  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   7.9  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 33.1 bits (72), Expect = 0.48
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -3

Query: 411 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 232
           NGG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 231 LVS 223
             S
Sbjct: 137 RAS 139


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 246 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 127
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = +1

Query: 241 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCVHEPPVQ 414
           P S+ + +PVPTLP++   + F   G    S H +  R Y        S  G V   P  
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341

Query: 415 PDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYV 528
           P     + +Y   ++     + P  A     +   R+V
Sbjct: 342 PSYPPAAPSYPPATSAASSSVQPFHAEAAAHLRHPRHV 379


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 430 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 299
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 609 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 511
           Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,320,073
Number of Sequences: 37544
Number of extensions: 707223
Number of successful extensions: 2108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2107
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3980760984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)