Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D07
         (1327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    73   1e-13
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    60   5e-10
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    45   3e-05
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    42   1e-04
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    32   0.20 
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    29   1.9  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    28   3.3  

>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
 Frame = +2

Query: 254 KELDYIMGGAAAWENVDSTDAVCP--KCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAH 427
           KE+D ++GG  A+E+   T+  C   KC   RAYF QLQ RSADEPM+TFYRC   KC  
Sbjct: 47  KEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCT--KCKF 104

Query: 428 NWRD 439
            WR+
Sbjct: 105 QWRE 108


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 408

 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 25/176 (14%)
 Frame = +1

Query: 619  IAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSIADLRK-----WGEA--- 774
            +A PT+T+YGL   A   +A+  +Y  K R A  P+ + V S+  LR+     + +A   
Sbjct: 56   VAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLDQLRRLLLSAYPKAKSE 115

Query: 775  ----SHISDKLLDSLL--------PGPVTVVLQKTKHLDNPFLNPSTTK----IGIRIPK 906
                +H S++++  +         PGP++++L       NP ++P  T       +R+P+
Sbjct: 116  VKNQAHDSEEIIPKVYLPLIKKFWPGPLSILLPVVDEA-NPPVSPIVTAGQKTFAVRMPQ 174

Query: 907  HDFMNTVTKIFDMPVAXTSANFSNEPS-TXSIXEXEHLXPXLXXIFDGGLLXSGXE 1071
            H     +  I D P+A  SAN S  PS T +      L   +  I DGG    G E
Sbjct: 175  HPVALALISISDSPLAAPSANASTRPSPTLAKHVYNDLQGKIPLILDGGACGVGVE 230


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +2

Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
           C KC   +  + Q+QTRSADEPMTTF  C    C + W+
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCECT--VCGNRWK 291


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 293 ENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRC--CNHKCAHN 430
           E   + +  CPKCG     F  LQ RSADE  T FY C  C +K + N
Sbjct: 71  EEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTN 118


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +2

Query: 245 SSAKELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRC 406
           SS  E   +   A+    +  +D  CP+C    A F Q  +R  D  MT  Y C
Sbjct: 50  SSNVENTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVC 103


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 153 LHKFN**SRFFFNMLFCPTCANMLMVEEGPEAALR-N*IILWEELPHGKTLIQQ 311
           LH +N        ML   T   M+   +G +  LR N + LW+ LP G+T   Q
Sbjct: 185 LHSYN---EVMEKMLNACTKPEMMQFNDGNDIPLRSNPVSLWKSLPEGETFTPQ 235


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 685 KLYCIKGREAVKPVAICVTSIADLRKWGEASHI 783
           + Y I     V P  + VT++ D ++W + +HI
Sbjct: 441 RYYSISSSSVVHPDKVHVTAVVDKKEWTDKNHI 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,105,927
Number of Sequences: 5004
Number of extensions: 81864
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 727307148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)