Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_D07
(1327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0053 - 5289119-5289176,5289302-5289593,5289689-5289864,529... 151 1e-36
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 77 4e-14
12_02_0765 + 22980542-22980570,22980673-22980748,22981113-229812... 53 4e-07
03_01_0015 + 126611-126639,126718-127099 51 2e-06
07_01_0873 - 7257016-7257957,7260083-7260262 50 3e-06
03_06_0445 - 33982018-33982965,33984308-33984463 50 3e-06
08_02_1370 + 26457276-26457482,26457600-26457721,26458240-264582... 45 2e-04
03_05_0889 + 28543106-28543354,28544379-28544465,28544548-285446... 36 0.054
01_06_1338 + 36411536-36411646,36411738-36411791,36411898-364119... 32 1.2
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 30 4.7
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 29 6.2
>03_02_0053 - 5289119-5289176,5289302-5289593,5289689-5289864,
5290272-5290493,5291261-5291337
Length = 274
Score = 151 bits (366), Expect = 1e-36
Identities = 71/162 (43%), Positives = 103/162 (63%), Gaps = 1/162 (0%)
Frame = +1
Query: 583 LRAAECLAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSIADLRK 762
++A + + +GQVIAVPTDTIYG AC A +A+ ++Y IKGR +P+AICV + D+ +
Sbjct: 73 MKAIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLAICVADVPDISR 132
Query: 763 WGEASHISDKLLDSLLPGPVTVVLQK-TKHLDNPFLNPSTTKIGIRIPKHDFMNTVTKIF 939
+ H+ LLDSLLPGPVTVVL++ + LNP IG+R+P DF+ +++
Sbjct: 133 FAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPDFDFIRAISRGA 192
Query: 940 DMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGGLLXSG 1065
+A TSAN S PS+ ++ + E L P +FDGG+L SG
Sbjct: 193 GSALALTSANLSGHPSSVNVKDFEDLWPHCSYVFDGGILPSG 234
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 76.6 bits (180), Expect = 4e-14
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +2
Query: 254 KELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 433
KE++ I + A +N T CP+C G AY+ Q+Q RSADEPM+TFY+CC +C +W
Sbjct: 774 KEVEPIFSDSDAMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDW 833
Query: 434 RD 439
R+
Sbjct: 834 RE 835
>12_02_0765 +
22980542-22980570,22980673-22980748,22981113-22981271,
22981370-22981450
Length = 114
Score = 53.2 bits (122), Expect = 4e-07
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 248 SAKELDYIMGGAAAWENVDSTDAV-CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCA 424
SA E ++ A + T AV C CG+G A F Q R +E MT F+ CCN C
Sbjct: 51 SAGEFTQVLQDVAGDPTLPRTKAVRCAVCGHGEAVFFQATARG-EEGMTLFFVCCNPSCG 109
Query: 425 HNWRD 439
H WR+
Sbjct: 110 HRWRE 114
>03_01_0015 + 126611-126639,126718-127099
Length = 136
Score = 51.2 bits (117), Expect = 2e-06
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 248 SAKELDYIMGGAAAWENVDSTDAV-CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCA 424
+A E ++ A+ + T V C CG+G A F Q R +E MT F+ CCN CA
Sbjct: 73 AAGERTQVLQDVASDPTLPRTKTVRCAACGHGEAVFFQATARG-EEGMTLFFVCCNLTCA 131
Query: 425 HNWRD 439
H WR+
Sbjct: 132 HRWRE 136
>07_01_0873 - 7257016-7257957,7260083-7260262
Length = 373
Score = 50.4 bits (115), Expect = 3e-06
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C +CG + + QLQTRSADEPMTTF C N C ++W+
Sbjct: 335 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 371
>03_06_0445 - 33982018-33982965,33984308-33984463
Length = 367
Score = 50.4 bits (115), Expect = 3e-06
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C +CG + + QLQTRSADEPMTTF C N C ++W+
Sbjct: 329 CGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 365
>08_02_1370 +
26457276-26457482,26457600-26457721,26458240-26458293,
26458390-26458431,26458553-26458667,26458746-26458909,
26459280-26459349,26459897-26459995,26460277-26460354
Length = 316
Score = 44.8 bits (101), Expect = 2e-04
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Frame = +1
Query: 595 ECLAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKG---REAVKPVAICVTSIADL--- 756
E + +G V +PTDT+Y + C + ++++L IKG +A I S+ D+
Sbjct: 95 ELINRGAVGIIPTDTVYSIVCDLSNNDSVERLRRIKGIGDSKARYAKTILCRSLRDIDTY 154
Query: 757 -----RKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFL-NPSTTK------IGIRI 900
R + + + ++PGP T +L TK L + + S+T+ +G+R+
Sbjct: 155 TTGFPRGTNQGQANIFRAVKRVIPGPYTFILPATKELPKQCIRHGSSTRYAKRRQVGVRL 214
Query: 901 PKHDFMNTVTKIFDMPVAXTSANFSNE 981
P + + D P+ TS +E
Sbjct: 215 PDDPICEAILQNLDEPLICTSVKSLSE 241
>03_05_0889 +
28543106-28543354,28544379-28544465,28544548-28544604,
28544704-28544781
Length = 156
Score = 36.3 bits (80), Expect = 0.054
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 439
C KC + Q RSADE T FY+C N C H + +
Sbjct: 117 CEKCKNPELQYYTKQLRSADEGQTVFYKCAN--CRHEFNE 154
>01_06_1338 +
36411536-36411646,36411738-36411791,36411898-36411974,
36412108-36412195,36412289-36412561,36412651-36412968
Length = 306
Score = 31.9 bits (69), Expect = 1.2
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 649 LACSANCPQAIKKLYCIKGREAVKPVAICVTSIADLRKWGEASHISDKLLDSLLPGPVTV 828
L C A P A+ ++ C G + K A C TS L + + +DS+LP V
Sbjct: 165 LLCVARVPPAVDQVECHPGWQQAKLRAFCHTSGVHLSAYAPLGRMKGIAVDSVLPS-VAE 223
Query: 829 VLQKT 843
+L +T
Sbjct: 224 MLGRT 228
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 29.9 bits (64), Expect = 4.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 706 REAVKPVAICVTSIADLRKWGEASHISDKLLDSLLP 813
R V+P+ +C+ S + EA ++DKLLD + P
Sbjct: 358 RRTVEPLEVCMDSDKFIPVGDEAEQVNDKLLDVIRP 393
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 29.5 bits (63), Expect = 6.2
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +2
Query: 194 AILSNVRQHAYGGRRS*SSAKELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRS 373
+++S+ + YGG S S E+DYI G + +DAV P + Y ++ +
Sbjct: 302 SLISSTYSNGYGGDESSFSGSEVDYIDEGGSP----SDSDAVSPMSRHSWDY---IRRHN 354
Query: 374 ADEPMTTFYRCCNH 415
+ +TF R +H
Sbjct: 355 SPHSASTFSRAHSH 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,534,946
Number of Sequences: 37544
Number of extensions: 488296
Number of successful extensions: 923
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4155355764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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