Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_D07
(1327 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC080186-1|AAH80186.2| 279|Homo sapiens yrdC domain containing ... 151 6e-36
BC068057-1|AAH68057.1| 270|Homo sapiens YRDC protein protein. 151 6e-36
BC067857-1|AAH67857.2| 278|Homo sapiens YRDC protein protein. 151 6e-36
BC008984-1|AAH08984.3| 292|Homo sapiens YRDC protein protein. 151 6e-36
AY286020-1|AAP37054.1| 270|Homo sapiens ischemia/reperfusion in... 151 6e-36
AY286019-1|AAP37053.1| 270|Homo sapiens ischemia/reperfusion in... 151 6e-36
AY172561-1|AAO41711.1| 279|Homo sapiens YRDC protein protein. 151 6e-36
AL929472-8|CAH70083.1| 279|Homo sapiens ischemia/reperfusion in... 151 6e-36
AF250397-1|AAQ14263.1| 223|Homo sapiens dopamine receptor inter... 151 6e-36
Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA... 115 4e-25
DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA polyme... 115 4e-25
BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (D... 115 4e-25
AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed R... 115 4e-25
AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein. 115 4e-25
AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subu... 115 4e-25
AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subu... 115 4e-25
AK027129-1|BAB15668.1| 127|Homo sapiens protein ( Homo sapiens ... 67 1e-10
BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongatio... 45 7e-04
AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongatio... 45 7e-04
AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongatio... 45 7e-04
AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongatio... 45 7e-04
X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation ... 44 0.001
X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation ... 44 0.001
M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation ... 44 0.001
CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein. 44 0.001
BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongatio... 44 0.001
BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongatio... 44 0.001
D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation ... 43 0.002
CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein. 43 0.002
BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongatio... 43 0.002
AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongatio... 43 0.002
AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongatio... 43 0.002
AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongatio... 43 0.002
X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation ... 43 0.003
Z23102-1|CAA80649.1| 125|Homo sapiens RNA Polymerase II subunit... 40 0.015
BC067794-1|AAH67794.1| 125|Homo sapiens polymerase (RNA) II (DN... 40 0.015
BC017112-1|AAH17112.1| 125|Homo sapiens polymerase (RNA) II (DN... 40 0.015
AD001527-2|AAB51181.1| 125|Homo sapiens HUMAN DNA-DIRECTED RNA ... 40 0.015
CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein. 40 0.020
BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain cont... 40 0.020
BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain cont... 40 0.020
BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain cont... 40 0.020
AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain cont... 40 0.020
AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain cont... 40 0.020
AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain cont... 40 0.020
AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase ... 40 0.020
AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase ... 40 0.020
AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associate... 40 0.020
AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain cont... 40 0.020
>BC080186-1|AAH80186.2| 279|Homo sapiens yrdC domain containing (E.
coli) protein.
Length = 279
Score = 151 bits (366), Expect = 6e-36
Identities = 73/166 (43%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +1
Query: 571 FTASLRAAEC-LAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSI 747
+T +LRAA L G V+AVPTDT+YGLAC+A+C A++ +Y +KGR KP+A+C+ +
Sbjct: 66 WTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRV 125
Query: 748 ADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPKHDFMNTV 927
AD+ ++ + + LL LLPGPVT+V+++++ L N LNP T +GIRIP H FM +
Sbjct: 126 ADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEEL-NKDLNPFTPLVGIRIPDHAFMQDL 183
Query: 928 TKIFDMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGGLLXSG 1065
++F+ P+A TSAN S++ S+ ++ E + L P L + DGG + G
Sbjct: 184 AQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDG 229
>BC068057-1|AAH68057.1| 270|Homo sapiens YRDC protein protein.
Length = 270
Score = 151 bits (366), Expect = 6e-36
Identities = 73/166 (43%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +1
Query: 571 FTASLRAAEC-LAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSI 747
+T +LRAA L G V+AVPTDT+YGLAC+A+C A++ +Y +KGR KP+A+C+ +
Sbjct: 57 WTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRV 116
Query: 748 ADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPKHDFMNTV 927
AD+ ++ + + LL LLPGPVT+V+++++ L N LNP T +GIRIP H FM +
Sbjct: 117 ADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEEL-NKDLNPFTPLVGIRIPDHAFMQDL 174
Query: 928 TKIFDMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGGLLXSG 1065
++F+ P+A TSAN S++ S+ ++ E + L P L + DGG + G
Sbjct: 175 AQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDG 220
>BC067857-1|AAH67857.2| 278|Homo sapiens YRDC protein protein.
Length = 278
Score = 151 bits (366), Expect = 6e-36
Identities = 73/166 (43%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +1
Query: 571 FTASLRAAEC-LAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSI 747
+T +LRAA L G V+AVPTDT+YGLAC+A+C A++ +Y +KGR KP+A+C+ +
Sbjct: 65 WTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRV 124
Query: 748 ADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPKHDFMNTV 927
AD+ ++ + + LL LLPGPVT+V+++++ L N LNP T +GIRIP H FM +
Sbjct: 125 ADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEEL-NKDLNPFTPLVGIRIPDHAFMQDL 182
Query: 928 TKIFDMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGGLLXSG 1065
++F+ P+A TSAN S++ S+ ++ E + L P L + DGG + G
Sbjct: 183 AQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDG 228
>BC008984-1|AAH08984.3| 292|Homo sapiens YRDC protein protein.
Length = 292
Score = 151 bits (366), Expect = 6e-36
Identities = 73/166 (43%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +1
Query: 571 FTASLRAAEC-LAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSI 747
+T +LRAA L G V+AVPTDT+YGLAC+A+C A++ +Y +KGR KP+A+C+ +
Sbjct: 79 WTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRV 138
Query: 748 ADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPKHDFMNTV 927
AD+ ++ + + LL LLPGPVT+V+++++ L N LNP T +GIRIP H FM +
Sbjct: 139 ADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEEL-NKDLNPFTPLVGIRIPDHAFMQDL 196
Query: 928 TKIFDMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGGLLXSG 1065
++F+ P+A TSAN S++ S+ ++ E + L P L + DGG + G
Sbjct: 197 AQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDG 242
>AY286020-1|AAP37054.1| 270|Homo sapiens ischemia/reperfusion
inducible protein transcript variant 2 protein.
Length = 270
Score = 151 bits (366), Expect = 6e-36
Identities = 73/166 (43%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +1
Query: 571 FTASLRAAEC-LAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSI 747
+T +LRAA L G V+AVPTDT+YGLAC+A+C A++ +Y +KGR KP+A+C+ +
Sbjct: 57 WTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRV 116
Query: 748 ADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPKHDFMNTV 927
AD+ ++ + + LL LLPGPVT+V+++++ L N LNP T +GIRIP H FM +
Sbjct: 117 ADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEEL-NKDLNPFTPLVGIRIPDHAFMQDL 174
Query: 928 TKIFDMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGGLLXSG 1065
++F+ P+A TSAN S++ S+ ++ E + L P L + DGG + G
Sbjct: 175 AQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDG 220
>AY286019-1|AAP37053.1| 270|Homo sapiens ischemia/reperfusion
inducible protein transcript variant 1 protein.
Length = 270
Score = 151 bits (366), Expect = 6e-36
Identities = 73/166 (43%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +1
Query: 571 FTASLRAAEC-LAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSI 747
+T +LRAA L G V+AVPTDT+YGLAC+A+C A++ +Y +KGR KP+A+C+ +
Sbjct: 57 WTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRV 116
Query: 748 ADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPKHDFMNTV 927
AD+ ++ + + LL LLPGPVT+V+++++ L N LNP T +GIRIP H FM +
Sbjct: 117 ADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEEL-NKDLNPFTPLVGIRIPDHAFMQDL 174
Query: 928 TKIFDMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGGLLXSG 1065
++F+ P+A TSAN S++ S+ ++ E + L P L + DGG + G
Sbjct: 175 AQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDG 220
>AY172561-1|AAO41711.1| 279|Homo sapiens YRDC protein protein.
Length = 279
Score = 151 bits (366), Expect = 6e-36
Identities = 73/166 (43%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +1
Query: 571 FTASLRAAEC-LAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSI 747
+T +LRAA L G V+AVPTDT+YGLAC+A+C A++ +Y +KGR KP+A+C+ +
Sbjct: 66 WTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRV 125
Query: 748 ADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPKHDFMNTV 927
AD+ ++ + + LL LLPGPVT+V+++++ L N LNP T +GIRIP H FM +
Sbjct: 126 ADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEEL-NKDLNPFTPLVGIRIPDHAFMQDL 183
Query: 928 TKIFDMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGGLLXSG 1065
++F+ P+A TSAN S++ S+ ++ E + L P L + DGG + G
Sbjct: 184 AQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDG 229
>AL929472-8|CAH70083.1| 279|Homo sapiens ischemia/reperfusion
inducible protein protein.
Length = 279
Score = 151 bits (366), Expect = 6e-36
Identities = 73/166 (43%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +1
Query: 571 FTASLRAAEC-LAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSI 747
+T +LRAA L G V+AVPTDT+YGLAC+A+C A++ +Y +KGR KP+A+C+ +
Sbjct: 66 WTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRV 125
Query: 748 ADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPKHDFMNTV 927
AD+ ++ + + LL LLPGPVT+V+++++ L N LNP T +GIRIP H FM +
Sbjct: 126 ADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEEL-NKDLNPFTPLVGIRIPDHAFMQDL 183
Query: 928 TKIFDMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGGLLXSG 1065
++F+ P+A TSAN S++ S+ ++ E + L P L + DGG + G
Sbjct: 184 AQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDG 229
>AF250397-1|AAQ14263.1| 223|Homo sapiens dopamine receptor
interacting protein 3 protein.
Length = 223
Score = 151 bits (366), Expect = 6e-36
Identities = 73/166 (43%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +1
Query: 571 FTASLRAAEC-LAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPVAICVTSI 747
+T +LRAA L G V+AVPTDT+YGLAC+A+C A++ +Y +KGR KP+A+C+ +
Sbjct: 10 WTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRV 69
Query: 748 ADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPKHDFMNTV 927
AD+ ++ + + LL LLPGPVT+V+++++ L N LNP T +GIRIP H FM +
Sbjct: 70 ADVYRYCRV-RVPEGLLKDLLPGPVTLVMERSEEL-NKDLNPFTPLVGIRIPDHAFMQDL 127
Query: 928 TKIFDMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGGLLXSG 1065
++F+ P+A TSAN S++ S+ ++ E + L P L + DGG + G
Sbjct: 128 AQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDG 173
>Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 115 bits (276), Expect = 4e-25
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = +2
Query: 254 KELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 433
KE+D ++GGAAAWENVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 434 RD 439
RD
Sbjct: 107 RD 108
>DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA
polymerases III 12.5 kDa polypeptide protein.
Length = 108
Score = 115 bits (276), Expect = 4e-25
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = +2
Query: 254 KELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 433
KE+D ++GGAAAWENVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 434 RD 439
RD
Sbjct: 107 RD 108
>BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 115 bits (276), Expect = 4e-25
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = +2
Query: 254 KELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 433
KE+D ++GGAAAWENVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 434 RD 439
RD
Sbjct: 107 RD 108
>AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed RNA
polymerase III C11 subunit protein.
Length = 108
Score = 115 bits (276), Expect = 4e-25
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = +2
Query: 254 KELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 433
KE+D ++GGAAAWENVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 434 RD 439
RD
Sbjct: 107 RD 108
>AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein.
Length = 108
Score = 115 bits (276), Expect = 4e-25
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = +2
Query: 254 KELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 433
KE+D ++GGAAAWENVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 434 RD 439
RD
Sbjct: 107 RD 108
>AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subunit
protein.
Length = 108
Score = 115 bits (276), Expect = 4e-25
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = +2
Query: 254 KELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 433
KE+D ++GGAAAWENVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 434 RD 439
RD
Sbjct: 107 RD 108
>AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subunit
CII protein.
Length = 108
Score = 115 bits (276), Expect = 4e-25
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = +2
Query: 254 KELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 433
KE+D ++GGAAAWENVDST CPKC + RAYFMQLQTRSADEPMTTFY+CCN +C H W
Sbjct: 47 KEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 434 RD 439
RD
Sbjct: 107 RD 108
>AK027129-1|BAB15668.1| 127|Homo sapiens protein ( Homo sapiens cDNA:
FLJ23476 fis, clone HSI14935. ).
Length = 127
Score = 67.3 bits (157), Expect = 1e-10
Identities = 31/78 (39%), Positives = 50/78 (64%)
Frame = +1
Query: 832 LQKTKHLDNPFLNPSTTKIGIRIPKHDFMNTVTKIFDMPVAXTSANFSNEPSTXSIXEXE 1011
+++++ L N LNP T +GIRIP H FM + ++F+ P+A TSAN S++ S+ ++ E +
Sbjct: 1 MERSEEL-NKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEFQ 59
Query: 1012 HLXPXLXXIFDGGLLXSG 1065
L P L + DGG + G
Sbjct: 60 DLWPQLSLVIDGGQIGDG 77
>BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 44.8 bits (101), Expect = 7e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 44.8 bits (101), Expect = 7e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 44.8 bits (101), Expect = 7e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
>AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongation
factor TFIIS.h protein.
Length = 320
Score = 44.8 bits (101), Expect = 7e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 282 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 318
>X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 44.4 bits (100), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation
factor protein.
Length = 280
Score = 44.4 bits (100), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 278
>M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation
factor SII protein.
Length = 301
Score = 44.4 bits (100), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein.
Length = 301
Score = 44.4 bits (100), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 44.4 bits (100), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 44.4 bits (100), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEPMTTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
>D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation
factor S-II, hS-II-T1 protein.
Length = 299
Score = 43.2 bits (97), Expect = 0.002
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein.
Length = 299
Score = 43.2 bits (97), Expect = 0.002
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 43.2 bits (97), Expect = 0.002
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 272
Score = 43.2 bits (97), Expect = 0.002
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 270
>AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 270
Score = 43.2 bits (97), Expect = 0.002
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 270
>AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 43.2 bits (97), Expect = 0.002
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRS+DEPMTTF C ++C + W+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVC--NECGNRWK 297
>X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 42.7 bits (96), Expect = 0.003
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + Q+QTRSADEP+TTF C ++C + W+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPVTTFVVC--NECGNRWK 299
>Z23102-1|CAA80649.1| 125|Homo sapiens RNA Polymerase II subunit
14.5 kD protein.
Length = 125
Score = 40.3 bits (90), Expect = 0.015
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 311 DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 439
D C KCG+ A F Q + A++ M +Y C C H W +
Sbjct: 83 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC067794-1|AAH67794.1| 125|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa protein.
Length = 125
Score = 40.3 bits (90), Expect = 0.015
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 311 DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 439
D C KCG+ A F Q + A++ M +Y C C H W +
Sbjct: 83 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC017112-1|AAH17112.1| 125|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa protein.
Length = 125
Score = 40.3 bits (90), Expect = 0.015
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 311 DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 439
D C KCG+ A F Q + A++ M +Y C C H W +
Sbjct: 83 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>AD001527-2|AAB51181.1| 125|Homo sapiens HUMAN DNA-DIRECTED RNA
POLYMERASE II 14.5 KD SUBUNIT protein.
Length = 125
Score = 40.3 bits (90), Expect = 0.015
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 311 DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 439
D C KCG+ A F Q + A++ M +Y C C H W +
Sbjct: 83 DHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associated
zinc ribbon protein protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
>AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain
containing, 1 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.020
Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 DAVCPKCGY-GRAYFMQLQTRSADEPMTTFYRCCNHK 418
D CP+CG+ G AY + Q RSADE T FY C N K
Sbjct: 84 DRRCPRCGHEGMAYHTR-QMRSADEGQTVFYTCTNCK 119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,584,811
Number of Sequences: 237096
Number of extensions: 2799095
Number of successful extensions: 4308
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 4129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4290
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 19211134270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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