Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_D07
(1327 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071501-1|AAL49123.1| 248|Drosophila melanogaster RE55868p pro... 183 6e-46
AE013599-3052|AAF57437.2| 248|Drosophila melanogaster CG33786-P... 183 6e-46
AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-P... 123 5e-28
AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA... 54 4e-07
S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase... 52 1e-06
S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase... 51 4e-06
X53670-1|CAA37710.1| 313|Drosophila melanogaster protein ( Dros... 46 9e-05
L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription ... 46 9e-05
AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p pro... 46 9e-05
AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA... 46 9e-05
AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-P... 39 0.018
>AY071501-1|AAL49123.1| 248|Drosophila melanogaster RE55868p protein.
Length = 248
Score = 183 bits (445), Expect = 6e-46
Identities = 90/169 (53%), Positives = 120/169 (71%), Gaps = 1/169 (0%)
Frame = +1
Query: 547 TPVVSCVDFTASLRAAECLAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPV 726
TPV + D A A +CL GQVIA+PTDT+YGLAC AN AI++LY IKGR+ KPV
Sbjct: 30 TPVCAVGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPV 89
Query: 727 AICVTSIADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPK 906
AICV +I LR++G+A+H+SD+LL LLPGP+T+V+++T L N FLNPST+KIGIRIP
Sbjct: 90 AICVHNIDALRRFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSKIGIRIPD 149
Query: 907 HDFMNTVTKIF-DMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGG 1050
+FM + ++ + P+A TSAN S+ PS+ + E L P L +FD G
Sbjct: 150 FNFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAG 198
>AE013599-3052|AAF57437.2| 248|Drosophila melanogaster CG33786-PA,
isoform A protein.
Length = 248
Score = 183 bits (445), Expect = 6e-46
Identities = 90/169 (53%), Positives = 120/169 (71%), Gaps = 1/169 (0%)
Frame = +1
Query: 547 TPVVSCVDFTASLRAAECLAKGQVIAVPTDTIYGLACSANCPQAIKKLYCIKGREAVKPV 726
TPV + D A A +CL GQVIA+PTDT+YGLAC AN AI++LY IKGR+ KPV
Sbjct: 30 TPVCAVGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPV 89
Query: 727 AICVTSIADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPSTTKIGIRIPK 906
AICV +I LR++G+A+H+SD+LL LLPGP+T+V+++T L N FLNPST+KIGIRIP
Sbjct: 90 AICVHNIDALRRFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSKIGIRIPD 149
Query: 907 HDFMNTVTKIF-DMPVAXTSANFSNEPSTXSIXEXEHLXPXLXXIFDGG 1050
+FM + ++ + P+A TSAN S+ PS+ + E L P L +FD G
Sbjct: 150 FNFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAG 198
>AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-PA,
isoform A protein.
Length = 108
Score = 123 bits (297), Expect = 5e-28
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +2
Query: 254 KELDYIMGGAAAWENVDSTDAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNW 433
KE+D+++GG AAWENVDSTDA CP CG+ RAYFMQ+QTRSADEPMTTFY+CCNH+C H W
Sbjct: 47 KEVDHVLGGKAAWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTW 106
Query: 434 RD 439
RD
Sbjct: 107 RD 108
>AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA
protein.
Length = 129
Score = 54.0 bits (124), Expect = 4e-07
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +2
Query: 311 DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 439
D CPKC + A F Q QTR A+E M +Y C N C H W +
Sbjct: 87 DHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase II
15-kda subunit protein.
Length = 129
Score = 52.4 bits (120), Expect = 1e-06
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2
Query: 311 DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 439
D CPKC + A F + QTR A+E M +Y C N C H W +
Sbjct: 87 DHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase II
subunit 9 protein.
Length = 129
Score = 50.8 bits (116), Expect = 4e-06
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +2
Query: 311 DAVCPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWRD 439
D CPKC + A Q QTR A+E M +Y C N C H W +
Sbjct: 87 DHACPKCSHREAVSFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>X53670-1|CAA37710.1| 313|Drosophila melanogaster protein (
Drosophila gene forRNA polymerase II elongation factor
DmS-II. ).
Length = 313
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + QLQTRSADEPMTTF C ++C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription
elongation factor protein.
Length = 313
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + QLQTRSADEPMTTF C ++C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p
protein.
Length = 313
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + QLQTRSADEPMTTF C ++C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA
protein.
Length = 313
Score = 46.4 bits (105), Expect = 9e-05
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRCCNHKCAHNWR 436
C KC + QLQTRSADEPMTTF C ++C + W+
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMC--NECGNRWK 311
>AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-PA
protein.
Length = 120
Score = 38.7 bits (86), Expect = 0.018
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 320 CPKCGYGRAYFMQLQTRSADEPMTTFYRC--CNHKCAHN 430
CPKC + + + LQ RSADE T F+ C C K + N
Sbjct: 81 CPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESEN 119
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,179,646
Number of Sequences: 53049
Number of extensions: 866773
Number of successful extensions: 1663
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 7212079170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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