Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D04
         (1260 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    27   0.39 
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   2.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   2.1  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 221 ANYQDDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIKYYRQIVLLRNK 78
           A++ D     GK + + K+ V+YT H   E       YY + + +R K
Sbjct: 141 ADFADAPDAIGKTRTKDKYRVVYTDHQRVELE--KEFYYSRYITIRRK 186


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 551 RLTMLRYKQSGRLGRSRSAHTEHVLLRP 634
           +L +LR+ QSG L R    H    ++ P
Sbjct: 109 KLCLLRFSQSGNLNRHMRVHGAASMMPP 136


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 551 RLTMLRYKQSGRLGRSRSAHTEHVLLRP 634
           +L +LR+ QSG L R    H    ++ P
Sbjct: 365 KLCLLRFSQSGNLNRHMRVHGAASMMPP 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,796
Number of Sequences: 336
Number of extensions: 4659
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36993960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)