Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D04
         (1260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    31   0.44 
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    30   0.77 
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.77 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   3.1  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   3.1  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   5.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   7.2  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    27   7.2  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   9.5  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +2

Query: 434 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 523
           R++HEA+G+  FG + P     E+FH++ SG  +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -2

Query: 701 TSLRVEVGRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAAL*V-CLYDINGLL 525
           ++LR ++ +     R +A+  L G       G +     G+ ++ +A+ +  L+D+ GL+
Sbjct: 427 STLRSDIEKSSKFSRTNALKTLYGSKPHVFSGSSQRRATGKNIHESAIALFSLHDVPGLM 486

Query: 524 DVLVYRILSNGS 489
           + L+Y+    GS
Sbjct: 487 EELIYKSRGRGS 498


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 797 EYHTEELNQSDTDSNAGEHHTNVLHVNNQFSKTSLRVEVGRVLGAGR 657
           +Y  E+L  SD DS+   HH N + + N+ ++    +   R + AGR
Sbjct: 76  QYCLEKLASSDNDSSVHNHHDNSV-LRNEDTQLQPHIVCNRTVRAGR 121


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 816 SIRSQYETVKLQQNLYDKTITNKNNEIQFY 905
           +IR + E  K QQ L    +TN NN+++ +
Sbjct: 679 AIRKELENSKYQQQLSTDRLTNANNDVEAF 708


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 251  HELHR*ELLQVRSDRSHHCRHYCFHCRVLRLLWRCQREPLH-DNNVFSIP 397
            HE+ R     V   + HH +     C +  L+  C  E  H DN + +IP
Sbjct: 1594 HEISRFNSQSVFKSKKHHLKSIVVKCTLQLLMLNCLWELFHSDNMLTNIP 1643



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 497  NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 393
            +GS+ + H++ FQ    H T  +  +   EY   E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 444 MKHTDLEDSVMRNLNASITQYPVDKN 521
           +K   +EDS + N+ AS+  + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +1

Query: 820  FAANMKQLNYNKTYMIKPLLIRITKFNSIS 909
            + +N+K++  NK+Y    ++ RI+ F+S+S
Sbjct: 1758 YKSNVKEIKGNKSYDSYEIVARISSFDSLS 1787


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 107 YRQIVLLRNKMIHTSANKARXXXGIXR 27
           Y     L  K IHTSANKAR    + R
Sbjct: 62  YNNTSSLCTKYIHTSANKARHVINVVR 88


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 712 SLVRHPFEWKLVEFSVQAA 656
           SLVRHP   K++ F +Q+A
Sbjct: 150 SLVRHPHRLKMLPFGIQSA 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,984,235
Number of Sequences: 5004
Number of extensions: 77886
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)