Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_D04
(1260 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 96 4e-20
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 81 1e-15
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 54 3e-07
Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical pr... 54 3e-07
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 54 3e-07
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 54 3e-07
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 48 1e-05
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 44 2e-04
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 44 2e-04
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 38 0.011
Z73971-4|CAA98254.1| 205|Caenorhabditis elegans Hypothetical pr... 38 0.020
AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical ... 35 0.14
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 34 0.24
Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical pr... 33 0.32
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 33 0.32
U64608-5|AAB04596.1| 393|Caenorhabditis elegans Hypothetical pr... 33 0.43
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 33 0.43
L14745-7|AAK71354.1| 234|Caenorhabditis elegans Tetraspanin fam... 33 0.56
Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 31 2.3
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 31 2.3
U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin fam... 29 6.9
L17337-5|ABM74562.1| 306|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 29 9.2
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 29 9.2
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 96.3 bits (229), Expect = 4e-20
Identities = 56/235 (23%), Positives = 97/235 (41%), Gaps = 1/235 (0%)
Frame = +3
Query: 132 LEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFT-DENFYKXXXXXXXXX 308
+EGG++ VKYL+F NL+ + GL ++IVG ++ ++ DE
Sbjct: 2 VEGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERL--ATPILLLVI 59
Query: 309 XXXXXXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN 488
CCGA++EN+C+ ++F+V L ++ E+A I GY H + L
Sbjct: 60 GSLCTLLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQ 119
Query: 489 ASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACT 668
+ +Y + V+ D +CCG+ + +DW IP +CC + + C
Sbjct: 120 TGMVRYHESRGVESAWDKTHQLFECCGVTNSSDWLTF-TTIPDSCCIEE------IEGCA 172
Query: 669 ENSTNFHSKGCLTKLVVHMKDXXXXXXXXXXXXXXXXXXXXXFACCLARSIRSQY 833
+ GC+ + + FACCL++SI +
Sbjct: 173 RENAPLFEPGCIHSVEQWVLKNGAMVGGICAVLAAIQLVGVCFACCLSKSILKDF 227
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 81.4 bits (192), Expect = 1e-15
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Frame = +3
Query: 150 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDE--NFYKXXXXXXXXXXXXXX 323
CVKY +F FN++F + G +L+ G+ A+I ++N + Y
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVGFLTF 96
Query: 324 XXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQ 503
C G+++EN + +S L ++ +AE + G+ Y L++ + LN +
Sbjct: 97 IIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVG 156
Query: 504 YPVDKNVQKTIDIIQTDLQCCGINSPADW-ADHGLPIPSTCCSAQEINDGVVAACTENST 680
Y D ++Q ID +Q CCGIN DW + I + ++ E GV +C NS+
Sbjct: 157 YRDDPDLQLLIDSMQETWMCCGINGADDWDRNTYFSIEAREVASPEAG-GVPFSCCINSS 215
Query: 681 NFHSK 695
K
Sbjct: 216 KLEFK 220
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 53.6 bits (123), Expect = 3e-07
Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 5/154 (3%)
Frame = +3
Query: 144 MSCVKYLMFCFNLLFAITGLIILIVGI----RAEINSYPYMNFTDENFYKXXXXXXXXXX 311
++ ++ + F FN F ++G+++ +GI + + ++ T ++
Sbjct: 5 VNALRIVTFLFNFAFWLSGVVVFGLGIWLLFDPAASDFFALHSTHPGAFRYVGWFLVGAG 64
Query: 312 XXXXXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNA 491
C GA K N C + F L++ F ELA + + K ++ V ++
Sbjct: 65 AIIILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYD 124
Query: 492 SI-TQYPVDKNVQKTIDIIQTDLQCCGINSPADW 590
+I +Y + + D +Q +CCG+ + DW
Sbjct: 125 TIRNRYSSETAFKDAFDTVQEKFECCGVKTYTDW 158
>Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical
protein B0198.1 protein.
Length = 279
Score = 53.6 bits (123), Expect = 3e-07
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Frame = +3
Query: 363 NHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNL-NASITQYPVDKNVQKTID 539
N C ++ + + L+ + E + + H E + +L N + Y +D N+ K ++
Sbjct: 92 NRCALVFYLLMLIFSMIMEGCLIYFTFSYHATYEQELNASLPNDILNNYNLDPNIAKAVN 151
Query: 540 IIQTDLQCCGINSPADW-----ADHGLP-----------IPSTCCSAQEINDGVVAACTE 671
+Q D +CCG N+ DW DH LP IP +CC + G A ++
Sbjct: 152 YLQRDSKCCGSNAFNDWPKPEVEDHYLPYAKTVVQRVQYIPDSCCKSTHQRKG--CALSD 209
Query: 672 NSTNFHSKGCL 704
+ N +GCL
Sbjct: 210 SPNNIFYRGCL 220
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 53.6 bits (123), Expect = 3e-07
Identities = 41/200 (20%), Positives = 89/200 (44%), Gaps = 6/200 (3%)
Frame = +3
Query: 147 SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXX 326
+C+K+L+F N + + G+ IL +G+ I + + D
Sbjct: 28 ACLKWLVFLLNSIVFLVGVGILALGVYLFIKDFREVKLVD--IILNPAILISIFGFSICV 85
Query: 327 XXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDLEDSVMRN--LNASI 497
GA+++N ++ F+ + + ++ +AV + + + +TD + + N L ++
Sbjct: 86 VSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAV 145
Query: 498 TQYPVDKNVQKTIDIIQTDLQCCGINSPAD-WADHGLPIPSTCCSA--QEINDGVVAACT 668
Y ++N+ + +D +Q +L+CCG++S A + D + C ++ Q GV +C
Sbjct: 146 KNYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSNPQPEKCGVPFSCC 205
Query: 669 ENSTNFHSKGCLTKLVVHMK 728
S + G L+ M+
Sbjct: 206 RKSVISEAAGSSNPLLPAMR 225
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 53.6 bits (123), Expect = 3e-07
Identities = 41/200 (20%), Positives = 89/200 (44%), Gaps = 6/200 (3%)
Frame = +3
Query: 147 SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXX 326
+C+K+L+F N + + G+ IL +G+ I + + D
Sbjct: 52 ACLKWLVFLLNSIVFLVGVGILALGVYLFIKDFREVKLVD--IILNPAILISIFGFSICV 109
Query: 327 XXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDLEDSVMRN--LNASI 497
GA+++N ++ F+ + + ++ +AV + + + +TD + + N L ++
Sbjct: 110 VSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAV 169
Query: 498 TQYPVDKNVQKTIDIIQTDLQCCGINSPAD-WADHGLPIPSTCCSA--QEINDGVVAACT 668
Y ++N+ + +D +Q +L+CCG++S A + D + C ++ Q GV +C
Sbjct: 170 KNYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSNPQPEKCGVPFSCC 229
Query: 669 ENSTNFHSKGCLTKLVVHMK 728
S + G L+ M+
Sbjct: 230 RKSVISEAAGSSNPLLPAMR 249
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 48.4 bits (110), Expect = 1e-05
Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 14/170 (8%)
Frame = +3
Query: 156 KYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXXXXXXX 335
KY +F N++F I G ++L +G+ +S + NF E + +
Sbjct: 58 KYGIFTANIVFLIVGGLLLAMGVWLRTDSR-FRNFISERYRQAVQEAFWEAPTLFAFSYI 116
Query: 336 XX-------------CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVM 476
CCG + +I +S+ + ++ VA L+ GI K L+ +
Sbjct: 117 IIVLGAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELS 176
Query: 477 RNLNASITQYPVDKNV-QKTIDIIQTDLQCCGINSPADWADHGLPIPSTC 623
LN + Y V Q+++D +QT +CCG +D+ IP +C
Sbjct: 177 DALNYMVQHYYQGPGVVQESLDHLQTAFRCCGNAGCSDFRVFRQDIPRSC 226
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 44.4 bits (100), Expect = 2e-04
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Frame = +3
Query: 345 CGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-------TQ 503
CGAV + +++ F +FL+ F+A++A+G + + D SV N+ + T
Sbjct: 46 CGAVNRSRFLLLAFVMFLIGTFLADVAMGTLS-LFYKDKVYSVKENVREIVKSKYGVMTS 104
Query: 504 YPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGV--VAACTE 671
P +K V + ID +Q +CCG P D+ ST ++EI + V+ CT+
Sbjct: 105 EPENKMVTEFIDKLQFYEKCCGSLGPTDYISSRWS-QSTNQDSEEIESPLFPVSCCTQ 161
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 44.0 bits (99), Expect = 2e-04
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Frame = +3
Query: 378 ITFSVFLLIIF-VAELAVGIAGYMKHTDLEDSVMRNLN--ASITQYPVDKNVQKTIDIIQ 548
I F + L+++ +A + + +L S++ N+N A +T+ + + T D +Q
Sbjct: 82 IGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNINTTAVVTKIGREIKLSLTWDHLQ 141
Query: 549 TDLQCCGINSPADWA-----DHGLPIPSTCCSAQEIN-DGVVAAC---TENSTNFHSKGC 701
+LQCCG+++ DW + L P +CC Q + + C + + + KGC
Sbjct: 142 RELQCCGVDNYTDWHYSVHWPNNLYTPDSCCDPQHFDAENGTENCGKLPDEQSLLYQKGC 201
Query: 702 LTK 710
K
Sbjct: 202 FPK 204
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 38.3 bits (85), Expect = 0.011
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +3
Query: 342 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 521
CCGA E+ ++ F ++I+ EL + + S+ + L S Y + KN
Sbjct: 86 CCGAGCESPVLLGLFIFIIVILTAVELGATVFAMTNREEFVSSIQQVLKKSSATYELRKN 145
Query: 522 VQKTIDIIQTDLQCCG 569
++ IQ QCCG
Sbjct: 146 IKP----IQNVFQCCG 157
>Z73971-4|CAA98254.1| 205|Caenorhabditis elegans Hypothetical
protein C50H2.6 protein.
Length = 205
Score = 37.5 bits (83), Expect = 0.020
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 606 PIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLV 716
P+P+T CSA I++ V +C ST H+K L+K V
Sbjct: 96 PLPATFCSAASIDNNAVKSCKNKSTTLHAKILLSKEV 132
>AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical
protein Y45F10B.1 protein.
Length = 241
Score = 34.7 bits (76), Expect = 0.14
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 390 VFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQC 563
V + I+FV ++ V I ++ + D + V + + Y + + T+D + T L+C
Sbjct: 99 VLVFIVFVVKI-VAIVMFLANNDHLRREFVGVYRDELVANYHNNSRTKNTLDWVHTSLKC 157
Query: 564 CGINSPADWADHGLPIPSTC 623
CG N D+ G P++C
Sbjct: 158 CGANGCEDFLPAG-NFPTSC 176
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 33.9 bits (74), Expect = 0.24
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +3
Query: 375 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTD 554
+IT+ V ++++ E+ G+A ++ L D+ ++A T N + IIQ
Sbjct: 101 MITYLVLIIVLVSLEIGCGVAVLVRRNSLHDNTNSLIDAMYT-----TNSVNDLKIIQDK 155
Query: 555 LQCCGINS 578
CCGI +
Sbjct: 156 YNCCGIEN 163
>Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical
protein F53B2.2 protein.
Length = 230
Score = 33.5 bits (73), Expect = 0.32
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 390 VFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQC 563
V + ++FV ++ V I ++ + D + V + + Y + + T+D + T L+C
Sbjct: 88 VLVFLVFVVKI-VAIVMFLANKDHLRREFVGVYRDELVANYHNNSRTKNTLDWVHTSLKC 146
Query: 564 CGINSPADWADHGLPIPSTC 623
CG N D+ G P++C
Sbjct: 147 CGANGCEDFLPAG-NFPTSC 165
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 33.5 bits (73), Expect = 0.32
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +3
Query: 348 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQ 527
GAV + ++ + +F++I+F+ E+A+GI +K + +V + S + N Q
Sbjct: 91 GAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTVKEYVFDSF-----NMNAQ 145
Query: 528 KTIDIIQTDLQCCGI-NSPADWADHGLPIPSTCCSA 632
I CCG N P G P TC SA
Sbjct: 146 ADISAFNFRYNCCGAENLPNLNCFAGQP---TCSSA 178
>U64608-5|AAB04596.1| 393|Caenorhabditis elegans Hypothetical
protein T22B7.7 protein.
Length = 393
Score = 33.1 bits (72), Expect = 0.43
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 146 HSTFESHCYSIKYYRQIVLLRNKMIHTSANKARXXXGIXRN 24
H T SH Y + YR I+ LR K+ TS NKA + +N
Sbjct: 143 HQTSLSHGYGLSPYRDII-LRGKVTWTSENKAEATVNVIQN 182
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 33.1 bits (72), Expect = 0.43
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 123 TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 257
TM L +K+ +F FNL+F + GLI L +G+ ++ Y N
Sbjct: 8 TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52
>L14745-7|AAK71354.1| 234|Caenorhabditis elegans Tetraspanin family
protein 2 protein.
Length = 234
Score = 32.7 bits (71), Expect = 0.56
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 348 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN-ASITQYPVDKNV 524
GA+ + ++ T V ++I F+ EL IA + K L + R N +T D
Sbjct: 91 GAISQKKPVLATCLVLIVIFFIMELGGSIALWSKRGSLRSLLYRFANDIYLTNSVFD--- 147
Query: 525 QKTIDIIQTDLQCCGI 572
I IIQ CCG+
Sbjct: 148 ---ISIIQNTYNCCGV 160
>Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical
protein F53B6.1 protein.
Length = 258
Score = 31.1 bits (67), Expect = 1.7
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Frame = +3
Query: 357 KENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLN--ASITQ-YPVD--KN 521
KE C + + +V ++I V + G G L NL S+ + Y K
Sbjct: 84 KEMRCFVTSCAVASIVIAVMLIIGGCIGLNFRDQLTHYTPLNLKMLTSLRELYGTHDMKG 143
Query: 522 VQKTIDIIQTDLQCCGIN--------SPADWADH----GLPIPSTCCSAQEI 641
+ ++ D +Q++ +CCG+N + W H L IP +CC EI
Sbjct: 144 ITESWDALQSNFKCCGVNGTDNAQIWKTSKWYMHQRAPKLLIPESCCIPSEI 195
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 450 HTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGIN-SPADWADHGLPIPS 617
HT+ S MR S + D+NV TI I+ ++ SP+ W + G+P+ S
Sbjct: 515 HTETPRSSMRFKENSSSVGSGDQNVSATIPIVPLSAPPKAVHQSPSSWINRGVPLSS 571
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 450 HTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGIN-SPADWADHGLPIPS 617
HT+ S MR S + D+NV TI I+ ++ SP+ W + G+P+ S
Sbjct: 515 HTETPRSSMRFKENSSSVGSGDQNVSATIPIVPLSAPPKAVHQSPSSWINRGVPLSS 571
>U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin family
protein 18 protein.
Length = 473
Score = 29.1 bits (62), Expect = 6.9
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 381 TFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRN-LNASITQYPVDKNVQKTIDIIQTDL 557
+ S++LL + + ++ + D+ M L + Y ++ +D I +
Sbjct: 102 SISIYLLCVSFMVCVLSYTLSLRISSEYDTKMTTILMTNYLNYNESMESRRLVDRIHIEY 161
Query: 558 QCCGINSPADWAD 596
CCG+NS D+ D
Sbjct: 162 SCCGVNSIEDFVD 174
>L17337-5|ABM74562.1| 306|Caenorhabditis elegans Hypothetical
protein ZK686.6 protein.
Length = 306
Score = 29.1 bits (62), Expect = 6.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 737 YGARRRWSRYRFGSAPRCDIRMLPRSFXSQPI 832
Y R R SR + S+P+C I LP+ F Q I
Sbjct: 7 YEKRERSSRIQKCSSPQCCINRLPKKFQDQDI 38
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 28.7 bits (61), Expect = 9.2
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 354 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 530
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 531 T 533
+
Sbjct: 59 S 59
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 28.7 bits (61), Expect = 9.2
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 354 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 530
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 531 T 533
+
Sbjct: 59 S 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,201,212
Number of Sequences: 27780
Number of extensions: 445321
Number of successful extensions: 1387
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3505977888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -