Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D04
         (1260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...   104   2e-24
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    26   0.60 
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    26   0.60 
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    26   0.60 
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    26   0.60 
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    26   0.60 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   9.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score =  104 bits (249), Expect = 2e-24
 Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 2/231 (0%)
 Frame = +3

Query: 141 GMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXXXXX 320
           GM  +KYL+F FN +FA+ GL IL +G+   +     ++   E                 
Sbjct: 4   GMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILG-VSKQIETGLAFPSITLIVLGSII 62

Query: 321 XXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLNAS 494
                  CCGA++E+HCM ITF+ FLL I + ++AV +  +  +K+ D   ++       
Sbjct: 63  FVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEI 122

Query: 495 ITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTEN 674
              Y ++   +  ID IQ +LQCCG++S +D+ D   PIP++CC++ E N       T +
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDK--PIPASCCNSPENN-------TCS 173

Query: 675 STNFHSKGCLTKLVVHMKDXXXXXXXXXXXXXXXXXXXXXFACCLARSIRS 827
            +N ++ GC+  L   +K                       A CLA SI++
Sbjct: 174 ISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIKN 224


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 813 RSIRSQYETVKLQQNLYDKTITNKNN---EIQFYFITYL 920
           R  R + +  K+  +L +KTI N NN   ++Q+Y I Y+
Sbjct: 70  RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYI 108


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 813 RSIRSQYETVKLQQNLYDKTITNKNN---EIQFYFITYL 920
           R  R + +  K+  +L +KTI N NN   ++Q+Y I Y+
Sbjct: 70  RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYI 108


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 813 RSIRSQYETVKLQQNLYDKTITNKNN---EIQFYFITYL 920
           R  R + +  K+  +L +KTI N NN   ++Q+Y I Y+
Sbjct: 70  RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYI 108


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 813 RSIRSQYETVKLQQNLYDKTITNKNN---EIQFYFITYL 920
           R  R + +  K+  +L +KTI N NN   ++Q+Y I Y+
Sbjct: 70  RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYI 108


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 813 RSIRSQYETVKLQQNLYDKTITNKNN---EIQFYFITYL 920
           R  R + +  K+  +L +KTI N NN   ++Q+Y I Y+
Sbjct: 303 RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYI 341


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 794 YHTEELNQSDTDSNAGEHHTNVLHVNNQF 708
           +H++ L+ SD D +  EH   +L + + F
Sbjct: 496 FHSQVLSMSDYDISNIEHEALLLVITSTF 524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,361
Number of Sequences: 438
Number of extensions: 5359
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)