Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_D03
         (1385 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   1.3  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   5.2  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   5.2  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   9.0  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +3

Query: 705 PPPAPLXXPGRXPXGXAPXXPSGGXXXPFPXXXGF 809
           PPP P   P   P    P     G   P P   GF
Sbjct: 585 PPPPPPMGPPPSPLAGGPLGGPAGSRPPLPNLLGF 619



 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = -3

Query: 591 PPPGPXXGPGPXP-AXGP 541
           PPP P  GP P P A GP
Sbjct: 585 PPPPPPMGPPPSPLAGGP 602


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
 Frame = +2

Query: 464 GXGXLXXGGG--VSGXPXXR-GXPXEGTXGPXAGXGPGPXXGPGGGXXRXG 607
           G G    GGG  ++G P    G    G  GP  G   G   G  GG    G
Sbjct: 817 GGGAGASGGGFLITGDPSDTIGAGGGGAGGPLRGSSGGAGGGSSGGGGSGG 867


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 491 GVSGXPXXRGXPXEGTXGPXAGXG-PGPXXGPGGGXXRXGXAPLXLXPK 634
           G+ G    +G P  G  G     G  GP   PGGG  R G AP    P+
Sbjct: 374 GLKGQSGPKGEP--GRDGIPGQPGIAGPAGAPGGGEGRPG-APGPKGPR 419


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 860 GXAPPPRXGXXTQPRXXKP 804
           G   PPR G  TQP+  +P
Sbjct: 196 GNVGPPRTGTPTQPQPPRP 214


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,643
Number of Sequences: 2352
Number of extensions: 11167
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 160119630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)