Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C22
(1266 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 396 e-111
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 206 7e-54
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 201 1e-52
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 199 8e-52
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 180 4e-46
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 160 4e-40
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 117 3e-27
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 115 1e-26
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 112 1e-25
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 111 3e-25
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 107 4e-24
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 105 2e-23
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 102 9e-23
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 100 5e-22
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 100 5e-22
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 97 3e-21
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 96 8e-21
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 95 2e-20
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 80 6e-16
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 68 2e-12
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 39 0.002
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 35 0.021
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 34 0.036
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 33 0.11
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 33 0.11
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 32 0.19
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.26
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 31 0.26
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.26
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 31 0.34
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 31 0.45
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 31 0.45
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 1.4
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 28 2.4
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 28 2.4
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 28 3.1
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 4.2
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 5.5
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 7.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 7.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 9.6
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 9.6
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 396 bits (974), Expect = e-111
Identities = 194/266 (72%), Positives = 218/266 (81%), Gaps = 1/266 (0%)
Frame = +2
Query: 194 YYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDK 373
YY KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+K M K
Sbjct: 19 YYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGK 78
Query: 374 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 553
KVLVKVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPLVSLMMVEK
Sbjct: 79 NKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEK 138
Query: 554 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 733
+PDSTYEMVGGL+KQIKEIKEVIELPVKHPELF++LGI QPKG+LLYGPPGTGKTLLARA
Sbjct: 139 IPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARA 198
Query: 734 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD-XXXXXXXXXXXX 910
VAHHT+C FIRVSGSELVQK+IGEGSRMVRELFVMAREHAPSIIFMD
Sbjct: 199 VAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSS 258
Query: 911 XXXXXXXVQRTMLELLNQLDGFEATK 988
VQRTMLELLNQLDGFEATK
Sbjct: 259 GGSGDSEVQRTMLELLNQLDGFEATK 284
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 206 bits (502), Expect = 7e-54
Identities = 101/215 (46%), Positives = 142/215 (66%)
Frame = +2
Query: 335 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 514
G +GEV+K +D ++ +VK ++VV NVD + + RV+L + T+ +ILP
Sbjct: 53 GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112
Query: 515 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 694
+VDPLV M +E D ++ VGGL++QI+E++EVIELP+K+PELF +GI PKGVLLY
Sbjct: 113 EVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLY 172
Query: 695 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
GPPGTGKTLLARAVA F++V S +V K+IGE +R++RE+F A+EH P +IFMD
Sbjct: 173 GPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMD 232
Query: 875 XXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFE 979
+QRT++ELLNQ+DGF+
Sbjct: 233 EIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 267
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 201 bits (491), Expect = 1e-52
Identities = 102/204 (50%), Positives = 128/204 (62%)
Frame = +2
Query: 368 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 547
+K ++ + KFVV L + V D+ RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 548 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 727
E+ PD TY VGG +QI+ ++EV+ELP+ PE F LGI PKG++LYGPPGTGKTL A
Sbjct: 171 EEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCA 230
Query: 728 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDXXXXXXXXXXX 907
RAVA+ T+ TFIRV GSELVQK++GEG+RMVRELF MAR IIF D
Sbjct: 231 RAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFD 290
Query: 908 XXXXXXXXVQRTMLELLNQLDGFE 979
VQRTMLEL+ QLDGF+
Sbjct: 291 DGAGGDNEVQRTMLELITQLDGFD 314
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 199 bits (485), Expect = 8e-52
Identities = 103/261 (39%), Positives = 158/261 (60%)
Frame = +2
Query: 206 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 385
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 386 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 565
PE + V + VD + + C V L +++ ++ +L + DP++++M ++K P
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 566 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 745
+Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 248
Query: 746 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDXXXXXXXXXXXXXXXXX 925
T TF+RV GSEL+QK++G+G R+VR+LF A EH+PSI+F+D
Sbjct: 249 TSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAE 308
Query: 926 XXVQRTMLELLNQLDGFEATK 988
+QRTMLELLNQLDGF+ ++
Sbjct: 309 REIQRTMLELLNQLDGFDTSQ 329
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 180 bits (438), Expect = 4e-46
Identities = 90/212 (42%), Positives = 133/212 (62%)
Frame = +2
Query: 344 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 523
+G+ ++ +D+ +V +VV + +D + + VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 524 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 703
+S++ ++ PD +Y VGGLD Q +E++E +ELP+ +L+ +GI P+GVLLYGPP
Sbjct: 118 SSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPP 177
Query: 704 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDXXX 883
GTGKT+L +AVA+ T FIRV GSE VQK++GEG RMVR++F MARE+AP+IIF+D
Sbjct: 178 GTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEID 237
Query: 884 XXXXXXXXXXXXXXXXVQRTMLELLNQLDGFE 979
VQR ++ELL Q+DGF+
Sbjct: 238 AIATKRFDAQTGADREVQRILIELLTQMDGFD 269
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 160 bits (388), Expect = 4e-40
Identities = 80/203 (39%), Positives = 120/203 (59%)
Frame = +2
Query: 374 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 553
K ++K + L V+ ++ + + +SY + LP++ D V M V++
Sbjct: 119 KSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDE 178
Query: 554 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 733
P Y +GGL KQI+E+ E I LP++ + F LG+ PKG L++GPPGTGKTLLARA
Sbjct: 179 KPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARA 238
Query: 734 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDXXXXXXXXXXXXX 913
A + TF++++ +LVQ FIG+G+++VR+ F +A+E +P+IIF+D
Sbjct: 239 CAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSE 298
Query: 914 XXXXXXVQRTMLELLNQLDGFEA 982
VQRTMLELLNQLDGF +
Sbjct: 299 KAGDREVQRTMLELLNQLDGFSS 321
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 117 bits (282), Expect = 3e-27
Identities = 48/102 (47%), Positives = 77/102 (75%)
Frame = +2
Query: 569 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 748
Y+ +GG +Q+ +I+E++ELP++HP+LF ++GI P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 749 ECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
F ++G E++ K GE +R+ F A +++P+IIF+D
Sbjct: 283 GAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFID 324
Score = 113 bits (271), Expect = 6e-26
Identities = 68/216 (31%), Positives = 113/216 (52%)
Frame = +2
Query: 341 YVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 520
YVG + + + + ++ E ++DLD++ +V + V + N + L P+ +
Sbjct: 426 YVGSDLASLCSEAAMQQIR-EKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSAL 484
Query: 521 DPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 700
V VE VP+ +E +GGL++ +E++E +++PV + E F G+ KGVL +GP
Sbjct: 485 RETV----VE-VPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGP 539
Query: 701 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDXX 880
PGTGKTLLA+A+A+ FI V G EL+ + GE VR++F AR AP ++F+D
Sbjct: 540 PGTGKTLLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDEL 599
Query: 881 XXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATK 988
R + +LL ++DG + K
Sbjct: 600 DSIAKARGASAGDSGGG-DRVVNQLLTEMDGVNSKK 634
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 115 bits (277), Expect = 1e-26
Identities = 59/144 (40%), Positives = 82/144 (56%)
Frame = +2
Query: 557 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 736
P+ + +GG ++ +++KE +E P+ H E F LG+ PKGVLLYGPPG KT+ A+A+
Sbjct: 543 PNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAI 602
Query: 737 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDXXXXXXXXXXXXXX 916
A T FI V G EL KF+GE R VR++F AR+ +PS+IF D
Sbjct: 603 ATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANRGEDNS 662
Query: 917 XXXXXVQRTMLELLNQLDGFEATK 988
R + LLN+LDG EA +
Sbjct: 663 S-----DRVVAALLNELDGIEALR 681
Score = 111 bits (267), Expect = 2e-25
Identities = 49/103 (47%), Positives = 69/103 (66%)
Frame = +2
Query: 566 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 745
T+ +GGL QI +I++++ELP ++PELF I P+GVLLYGPPGTGKT++ RAVA
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAAE 336
Query: 746 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
+ G +V K++GE +R++F AR H PSIIF+D
Sbjct: 337 ANAQVFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFID 379
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 112 bits (269), Expect = 1e-25
Identities = 57/116 (49%), Positives = 79/116 (68%)
Frame = +2
Query: 527 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 706
L S ++VEK P+ ++ + GL+ + +KE + LP+K P+LF G G+LLYGPPG
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPG 172
Query: 707 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
TGK+ LA+AVA TF +S S+LV K++GE R+VR+LF MARE PSIIF+D
Sbjct: 173 TGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFID 228
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 111 bits (266), Expect = 3e-25
Identities = 52/120 (43%), Positives = 76/120 (63%)
Frame = +2
Query: 515 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 694
KV P VP ++ +G L E++ I P+K PEL+ ++GI+ P GVLL+
Sbjct: 473 KVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLW 532
Query: 695 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
GPPG GKTLLA+AVA+ ++ FI + G EL+ K++GE R VR++F+ AR +P +IF D
Sbjct: 533 GPPGCGKTLLAKAVANESKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFD 592
Score = 102 bits (245), Expect = 9e-23
Identities = 47/109 (43%), Positives = 69/109 (63%)
Frame = +2
Query: 548 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 727
E D + +GGLD I E+ E++ +P+KHPE++ GI P+GVLL+GPPG GKT+LA
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLA 225
Query: 728 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
A+A+ FI +S +V GE + VRE+F A+ AP ++F+D
Sbjct: 226 NALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFID 274
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 107 bits (256), Expect = 4e-24
Identities = 50/124 (40%), Positives = 86/124 (69%), Gaps = 3/124 (2%)
Frame = +2
Query: 512 NKVDPLV-SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--IAQPKG 682
N+ + +V S +++ D +++ +GG+D+ + ++ + + P+K+PE+FD G ++ PKG
Sbjct: 68 NEYEQIVASQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKG 127
Query: 683 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSI 862
+LLYGPPG GKT+LA+A+A ++ TFI VS L K+ GE +++V LF +AR+ P+I
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTI 187
Query: 863 IFMD 874
IF+D
Sbjct: 188 IFID 191
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 105 bits (251), Expect = 2e-23
Identities = 58/153 (37%), Positives = 89/153 (58%)
Frame = +2
Query: 542 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 721
M E+ + + V G+D+ +E++E+++ ++ P F LG P+GVLL GPPGTGKT+
Sbjct: 257 MEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 722 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDXXXXXXXXX 901
LARAVA F +SGS+ + ++G G++ VRELF AR+ APSIIF+D
Sbjct: 316 LARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFID---ELDAIG 372
Query: 902 XXXXXXXXXXVQRTMLELLNQLDGFEATKXSSH 1000
+++T+ +LL LDGF + +H
Sbjct: 373 QKRNARDAAHMRQTLNQLLVDLDGFSKNEDLAH 405
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 102 bits (245), Expect = 9e-23
Identities = 56/148 (37%), Positives = 87/148 (58%), Gaps = 2/148 (1%)
Frame = +2
Query: 578 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 757
V G+D+ +EI E ++ +K+P+ ++ LG P+G +L GPPGTGKTLLA+A A
Sbjct: 298 VAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVP 356
Query: 758 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDXXXXXXXXXXXXXXXXXXXV- 934
F+ VSGSE ++ F+G G VR+LF AR++AP IIF+D
Sbjct: 357 FLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDER 416
Query: 935 QRTMLELLNQLDGFEATKXSSHY-GTNK 1015
+ T+ +LL ++DGF +++ + GTN+
Sbjct: 417 ESTLNQLLVEMDGFTSSEHIVVFAGTNR 444
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 100 bits (239), Expect = 5e-22
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 5/108 (4%)
Frame = +2
Query: 566 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA-- 739
++E VGGLD I ++KE++ LP+ +PE+F + P+GVL +GPPGTGKTL+ARA+A
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAAA 323
Query: 740 ---HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
+ + +F G++ + K++GE R +R LF A+ PSIIF D
Sbjct: 324 CSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFD 371
Score = 35.9 bits (79), Expect = 0.012
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +2
Query: 644 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR-VSGSELVQKFIGEGSRMV 820
E F+ L I +P+ L+ G G G+T L A+ E ++ S L+Q +
Sbjct: 593 ETFETLRIYKPR-FLICGRKGLGQTALGPAILQQYEGVHVQSFDMSTLLQDSTQSIETSI 651
Query: 821 RELFVMAREHAPSIIFM 871
LF+ R H PSII++
Sbjct: 652 IHLFLEVRRHTPSIIYI 668
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -2
Query: 269 GPE----DDEDFEIFRRQ*AVTLQSWLCSTGGSPRPSPY 165
GPE D ED EIF Q +++ S L SP+P Y
Sbjct: 1000 GPENVDMDIEDNEIFTNQSTMSVPSMLVENEESPKPDEY 1038
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 100 bits (239), Expect = 5e-22
Identities = 46/107 (42%), Positives = 68/107 (63%)
Frame = +2
Query: 554 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 733
VP ++ +GGL++ +++ ++LP++ PELF G+ GVLLYGPPGTGKTLLA+A
Sbjct: 649 VPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKA 707
Query: 734 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
VA F+ + G EL+ ++GE VR +F AR +P +IF D
Sbjct: 708 VATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFD 754
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 97.5 bits (232), Expect = 3e-21
Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Frame = +2
Query: 569 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 745
++ + GL+ +KE + P P+LF G+ +P +G+LL+GPPGTGKT+LARAVA
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQ--GLREPARGMLLFGPPGTGKTMLARAVATE 515
Query: 746 TECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
+ F +S S L KF+GE ++VR LF +A++ +PSIIF+D
Sbjct: 516 SRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVD 558
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 96.3 bits (229), Expect = 8e-21
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
Frame = +2
Query: 569 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA--- 739
+ +GGL+ I ++KE++ LP+ +PE+F L I P+GVL +GPPGTGKTL+AR +A
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLAANC 430
Query: 740 --HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDXXXXXXXXXXXXX 913
+ + +F GS+ + K++GE R +R LF AR PSIIF D
Sbjct: 431 STKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQ 490
Query: 914 XXXXXXVQRTMLELLNQLD 970
+ T+L L++ LD
Sbjct: 491 EQTHSSIVSTLLALMDGLD 509
Score = 28.7 bits (61), Expect = 1.8
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Frame = +2
Query: 407 KFVVDLDK-NVDIND-VTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMV 580
KF++DL++ +V I D V A+ ++A+ + +P + +V S +
Sbjct: 610 KFLIDLNEISVSICDFVVASEKIAVSTRRSDVKPNIPITDSHKILFKKSIEVITSKIRRL 669
Query: 581 GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP-------GTGKTLLARAVA 739
LD + ++ + +LP + EL I K + + P G G T L++ +
Sbjct: 670 LKLDVYLPTVESLQKLPAE--ELMRQKEINSLKTTMSFRPRLLITDIYGYGCTYLSKVLF 727
Query: 740 HHTECTFIR-VSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
+ ++ + SEL+ ++ ++F AR++APSIIF++
Sbjct: 728 SMLDGIHVQSLDISELLMDTTTSPRSLLTKIFSEARKNAPSIIFIN 773
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 95.1 bits (226), Expect = 2e-20
Identities = 45/100 (45%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = +2
Query: 578 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTEC 754
+ GLD +KE + P PELF G+ +P +G+LL+GPPGTGKT+LARAVA +
Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQ--GLREPVQGMLLFGPPGTGKTMLARAVATEAKA 438
Query: 755 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMD 874
TF +S S L K++G+ ++VR LF +A+ S+IF+D
Sbjct: 439 TFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVD 478
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 80.2 bits (189), Expect = 6e-16
Identities = 41/135 (30%), Positives = 71/135 (52%)
Frame = +2
Query: 578 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 757
+ G+ + + ++++IE PVK+ ++ + P G+LL+G PG GKT LA A++
Sbjct: 608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQ 667
Query: 758 FIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDXXXXXXXXXXXXXXXXXXXVQ 937
FI + G EL+ K+IG+ + VR+LF A+ P ++F D
Sbjct: 668 FISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFD---EFDSVAPRRGQDSTGVTD 724
Query: 938 RTMLELLNQLDGFEA 982
R + ++L Q+DG E+
Sbjct: 725 RVVNQILTQMDGAES 739
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 68.1 bits (159), Expect = 2e-12
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Frame = +2
Query: 578 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 754
+GGLD + I + + P + + LGI KG+LLYGPPGTGKTL+AR +
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNA 330
Query: 755 TFIR-VSGSELVQKFIGEGSRMVRELFVMA-REH 850
+ V+G E++ K++G+ VR+LF A RE+
Sbjct: 331 REPKIVNGPEILNKYVGQSEENVRKLFADAEREY 364
Score = 30.7 bits (66), Expect = 0.45
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 683 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRM--VRELFVMAREHAP 856
VLL GP +GKT LA +A +E F+++ +E + + E +R+ V +F + +
Sbjct: 588 VLLSGPIASGKTALAATIALGSEFPFVKLVSAESMVG-MNENARVAHVNRVFEDSYKSPL 646
Query: 857 SIIFMD 874
S+I +D
Sbjct: 647 SVIVVD 652
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 587 LDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 739
L+ +K+ I + + +++ + +D GI +G LLYGPPG+GKT A+A
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALA 263
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 35.1 bits (77), Expect = 0.021
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 581 GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP-GTGKTLLARAVAHHTECT 757
G L QI+E+ I P+K + DA + YG P G L V +HTE
Sbjct: 266 GSLRTQIEELAASINFPLKKLYVIDASRRSTHSNAFFYGLPWNKGIVLFDTLVKNHTEPE 325
Query: 758 FIRVSGSEL 784
I + G EL
Sbjct: 326 LIAILGHEL 334
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 34.3 bits (75), Expect = 0.036
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 683 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 778
++L+G GTGKT LAR +A T+ FI +S +
Sbjct: 123 MILWGSAGTGKTTLARLIAVTTKSRFIEISAT 154
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 32.7 bits (71), Expect = 0.11
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +2
Query: 524 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK----GVLL 691
P+ L EK E V L KQ+ E + L A G++ P L
Sbjct: 563 PVTRLKTTEKERLLNMEKV--LSKQVIGQNEAVTAVANAIRLSRA-GLSDPNQPIASFLF 619
Query: 692 YGPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 793
GP GTGKTLL +A+A E IR+ SE ++K
Sbjct: 620 CGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEK 656
Score = 26.6 bits (56), Expect = 7.3
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Frame = +2
Query: 686 LLYGPPGTGKTLLARAVAHH----------TECTFIRVSGSELV--QKFIGEGSRMVREL 829
+L G PG GKT +A +A + C + + LV KF GE ++ +
Sbjct: 206 VLIGEPGVGKTSIAEGLARRIIDDDVPANLSNCKLLSLDVGSLVAGSKFRGEFEERIKSV 265
Query: 830 FVMARE-HAPSIIFMD 874
E P I+F+D
Sbjct: 266 LKEVEESETPIILFVD 281
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 32.7 bits (71), Expect = 0.11
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 587 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 766
LD+ +K+V + ++ + G Q K + L GPPG GKT + +++A F R
Sbjct: 542 LDRDHYGLKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFR 601
Query: 767 VS 772
S
Sbjct: 602 FS 603
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 677 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 784
+ +L+ GPP TGKT +A +A ++ F+ +S SE+
Sbjct: 66 RAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEV 103
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 677 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 781
K +LL G PG GKT L A+A T +R++ S+
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGHQLVRINLSD 1594
Score = 30.3 bits (65), Expect = 0.59
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 683 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL--VQKFIG 802
+L+ GP +GKT + VA T F+R++ E +Q++IG
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVRINNHEHTDLQEYIG 938
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 31.5 bits (68), Expect = 0.26
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 560 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI-AQPKGVLLYGPPGTGKTLLARAV 736
DS G + I +K++ K P L +L + PKG+ LYG G GKT L
Sbjct: 80 DSMPAEKGSILSWISPLKKMFSRK-KSPTLTSSLPVPGMPKGIYLYGDVGCGKTALMDLF 138
Query: 737 AHH 745
H+
Sbjct: 139 YHN 141
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 662 GIAQPKGVLLYGPPGTGKTLLARAVA 739
G+ K VLL GPPG GKT A VA
Sbjct: 405 GLGLYKAVLLSGPPGIGKTTAAHLVA 430
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 31.1 bits (67), Expect = 0.34
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 686 LLYGPPGTGKTLLARAVAHH 745
L+ GPPGTGKT+ + +V +H
Sbjct: 411 LIQGPPGTGKTVTSASVVYH 430
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 30.7 bits (66), Expect = 0.45
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 683 VLLYGPPGTGKTLLARAVAHHTE 751
+++ G PGTGKT LA VA TE
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTE 33
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 30.7 bits (66), Expect = 0.45
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 677 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 784
KGVL G GTGKT LA A+A + F + GSE+
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEV 102
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 674 PKGVLLYGPPGTGK-TLLARAVAHHTECTFIRVSG 775
P V + GPPGTGK TL+ V +++ T +++G
Sbjct: 74 PVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITG 108
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 768 FLDQNWYKNLLEKVAEWCESSS*WPENM 851
+L + +K L+EK EW E+S W E M
Sbjct: 1105 YLAEIVFKTLVEKEREWRENSEEWKEKM 1132
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 683 VLLYGPPGTGKTLLARAVA 739
+L YGPPGTGKT A A
Sbjct: 59 MLFYGPPGTGKTSTILACA 77
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 764 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFM 871
RV E+VQ F G R+ REL MAR ++ M
Sbjct: 1032 RVENPEIVQMFGGNTDRLERELDRMARRKFKLVVSM 1067
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 686 LLYGPPGTGKTLLARAVAH---HTECTFIRVSGSELVQK 793
L GP G GKT L +A+A T+ IR SE +K
Sbjct: 536 LFLGPTGVGKTALTKALAEFLFDTDKAMIRFDMSEFQEK 574
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 683 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 781
++L G G GKT LA +AH + ++ S+
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQAGYKVLEINASD 451
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 557 PDSTYEMVGGLDKQIKEIKEV 619
P +YE++ GLDKQ + K+V
Sbjct: 18 PKESYELLHGLDKQYQSTKDV 38
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 450 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 352
TS+IS+ S S T++PS + +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 9.6
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +2
Query: 428 KNVDINDVTANCRVA---LRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQ 598
+++D+ + N R L N + +L + K L L + +++ D+ +
Sbjct: 1202 ESIDLQEYAPNIRFTAQKLFNATTSLREFAALK--SLRHLPLSQRILDANVTRLPSNFTD 1259
Query: 599 IKEIKEVIELPVKHPELFDALGIAQPKG-VLLYGPPGTGKT 718
K+ K + V P+ + + G L+ GPPGTGKT
Sbjct: 1260 DKKQKIMKSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKT 1300
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2
Query: 686 LLYGPPGTGKT 718
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,995,039
Number of Sequences: 5004
Number of extensions: 75813
Number of successful extensions: 282
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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