Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_C21
         (1259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    29   1.8  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    27   4.1  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   7.2  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    27   7.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   7.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   7.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   9.5  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   9.5  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   9.5  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 402 SF*SSIDFTTDKIRATWNEINEADMYRALNKFNDFFYSRNN 280
           +F S   F  D   A    +NE+D+ R + K ND +   NN
Sbjct: 38  TFNSMSVFKNDNAIANQTTVNESDVKRNVEKINDIYECSNN 78


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 599 ASSHSILKDSSSFSPIHCGFGSEAGTLLQVVFEGRLAESPLSFSELSV 456
           A   ++LK+ SSF P + G   E   + Q  F G++++  +S S+  +
Sbjct: 336 AKELAVLKEKSSFFPTNTGNTFETKPVKQDFFYGKVSDKGVSSSKKKI 383


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 722 FFKEWSANVLHQKDCFCIVKF 660
           F  +W+ N   +KDC C+ KF
Sbjct: 232 FRDDWTMNTSPEKDCRCVRKF 252


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 830 SGLEALISKPRILIT*LAELANRCSHMIWVERNPYMFF 717
           S LE   S+P IL+T L       S  IW   +P +FF
Sbjct: 39  SALEERASRPSILVTFLVLAGTILSLYIWPILSPDLFF 76


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = +1

Query: 256  LLCRRYYLIVSGIEKIIKFV------KCTIHISFVYFIPG 357
            +L  RYY++V  +E ++K+V      K  +++ F++ I G
Sbjct: 935  ILALRYYVLVRPLEALMKYVTTADRSKVAVYLDFMFVIAG 974


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = +1

Query: 256  LLCRRYYLIVSGIEKIIKFV------KCTIHISFVYFIPG 357
            +L  RYY++V  +E ++K+V      K  +++ F++ I G
Sbjct: 935  ILALRYYVLVRPLEALMKYVTTADRSKVAVYLDFMFVIAG 974


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 733  IHTCSSRNGLQTYST--RKIVFAS*NFSLLKLIFARTFREQCTSYFLLHHILF 581
            +H  S    L  Y    R+ +    N     LIF RTF ++     ++HH L+
Sbjct: 2367 LHAASVEKVLNEYLELQRRDLLQGKNVLPYSLIFVRTFSQETFLIIIMHHALY 2419


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 457 TDNSENERGDSASRPSKTTCSNVPASDPKPQWMGENEL 570
           T + E +RG S+S+PS+   +      P+P+    ++L
Sbjct: 262 TSDLEQQRGTSSSQPSENDANITALPKPEPKMYENSDL 299


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 415 RGHPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDP 540
           R HP P      KP  NS ++   S++RPS    +  PA+ P
Sbjct: 291 RKHPSP-----YKPYLNSSHDTLGSSTRPSSADTAGSPATSP 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,189,741
Number of Sequences: 5004
Number of extensions: 85151
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)