Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_C21
         (1259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   1.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   7.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 445 ECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQWMGENELES 576
           +C+P + +    G++A     ++ S   ASD  P     NE E+
Sbjct: 241 KCEPLELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNEHEA 284


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 406 KGDRGHPGPPGICECKPTDNSENERGDSASRP 501
           KGD     P G C CKP   ++ E+ +    P
Sbjct: 235 KGDGKWYLPSGGCHCKPGYQADVEKQECTECP 266


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 13/55 (23%), Positives = 18/55 (32%)
 Frame = +1

Query: 385 DAGLKGEKGDRGHPGPPGICECKPTDNSENERGDSASRPSKTTCSNVPASDPKPQ 549
           DA L         PG P       T  +      + +  +  T  N  A+ P PQ
Sbjct: 638 DASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQ 692


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 278,482
Number of Sequences: 438
Number of extensions: 6104
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)