Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_C20
         (1281 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...    35   0.14 
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    33   0.33 
L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical pr...    31   1.8  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
 Frame = +1

Query: 100 VVIFGSTGVIGLNAVEAALKKGLE-VRAFVRDPAKLPEH--LKDKVEIV--KGNVLEPDS 264
           V +FG++G +GL  V    K G + +  + +DP  + EH  L +  +++     +++ +S
Sbjct: 62  VTVFGASGFLGLPVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEES 121

Query: 265 VHEAVEGTDAVVITLGTR 318
           + +AV+ ++ V+  +GTR
Sbjct: 122 IRKAVKYSNVVINLIGTR 139


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 33.5 bits (73), Expect = 0.33
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -2

Query: 314 VPRVMTTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLR--AAST 141
           VP   T+ +VPST   T S SRT   + +T S   +   A   T  R   P L+  +A T
Sbjct: 582 VPSTTTSVTVPSTQKATPSPSRTTKKSTTTTSTTATPRQA---TPTRNPLPLLQTMSAIT 638

Query: 140 AFKPITPVEPKIT 102
           AF  +  +E  +T
Sbjct: 639 AFPTLLSMEKAVT 651


>L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical
           protein ZC21.9 protein.
          Length = 262

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 638 RNVPRSHLAMVLPGVFSGFTSIIISRLGSSV-KCGGNA 528
           R+   +HLA V+PGVF+   ++ I++L SS   C  N+
Sbjct: 13  RDQRHAHLAQVVPGVFTSLVALSIAQLTSSCPSCNTNS 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,451,054
Number of Sequences: 27780
Number of extensions: 440323
Number of successful extensions: 1236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)