Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C18
(1287 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 101 3e-22
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 42 2e-04
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 31 0.26
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 30 0.60
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 29 1.1
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 28 3.2
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 28 3.2
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 28 3.2
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 27 5.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 9.8
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 9.8
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 101 bits (241), Expect = 3e-22
Identities = 42/85 (49%), Positives = 54/85 (63%)
Frame = +3
Query: 477 NAPAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKLLSACVWKE 656
N P APS +S W E K D R YYYNSVT++S+WEKP++L EK LS WKE
Sbjct: 20 NQEGPSAAPSKTVASDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKE 79
Query: 657 YTTNTGRLYYHNIETKESSWVVPKE 731
Y T G+ Y++N+ T+ES W +P E
Sbjct: 80 YATADGKKYWYNVNTRESVWDIPDE 104
Score = 40.3 bits (90), Expect = 6e-04
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 525 WSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTS 620
W E+ DG+ Y+YN T++S+W+ PD+ K +
Sbjct: 77 WKEYATADGKKYWYNVNTRESVWDIPDEYKAA 108
Score = 34.7 bits (76), Expect = 0.028
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 648 WKEYTTNTGRLYYHNIETKESSWVVPKELQEIKDK 752
W E T R+YY+N T++S W P+EL +K
Sbjct: 36 WHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEK 70
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 525 WSEHKAPDGRTYYYNSVTKQSLWEKPDDL-KTSAEKLLSACVWKEYTTNTGRLYYHNIET 701
W+EHKAP G YY+N+ K+S +++P + K + + ++ + T+ N E
Sbjct: 9 WTEHKAPSGIPYYWNAELKKSTYQRPSFIEKNHSSSVTASQASLAFNTSEKLFVNENAEE 68
Query: 702 KESSWVVPKELQE 740
+++S + K+L +
Sbjct: 69 RKNSRDLRKQLPD 81
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 648 WKEYTTNTGRLYYHNIETKESSWVVPKELQE 740
W T R ++HN+++ ES W P E+ +
Sbjct: 95 WVVVFTKKNRYFFHNLKSHESYWEPPLEISK 125
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 31.5 bits (68), Expect = 0.26
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 462 FKPELNAPAPDVAPSANQSSP-WSEHKAPDGRTYYYNSVT-KQSLWEKPDDLKTS 620
+ PE N D+ +A S WS +PDG+T + SV + ++W+ P D K S
Sbjct: 86 WNPETNE-FRDLGNNAQHPSECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKIS 139
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 30.3 bits (65), Expect = 0.60
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 648 WKEYTTNTGRLYYHNIETKESSWVVP 725
W+ T N GR YY + T+ ++W+ P
Sbjct: 211 WERRTDNLGRTYYVDHNTRSTTWIRP 236
Score = 29.9 bits (64), Expect = 0.80
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Frame = +3
Query: 525 WSEHKAPDGRTYYYNSVTKQSLWEKP-----------DDLKTSAEKLLSACV-----WKE 656
W + P+GR Y+ + T+ + W P + T ++ +S W+
Sbjct: 294 WEQRYTPEGRPYFVDHNTRTTTWVDPRRQQYIRSYGGPNNATIQQQPVSQLGPLPSGWEM 353
Query: 657 YTTNTGRLYYHNIETKESSWVVPK 728
TNT R+Y+ + TK ++W P+
Sbjct: 354 RLTNTARVYFVDHNTKTTTWDDPR 377
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 648 WKEYTTNTGRLYYHNIETKESSWVVPKELQEIK 746
W++ T GR Y+ + T+ ++WV P+ Q I+
Sbjct: 294 WEQRYTPEGRPYFVDHNTRTTTWVDPRRQQYIR 326
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 552 RTYYYNSVTKQSLWEKPDDLKTSAEKLLSACVWKEYTTNT 671
R Y++N+ T +SLWE P +A K A +E T T
Sbjct: 20 RPYFFNTETHESLWEPPAATDMAALKKFIANELQESVTPT 59
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 3.2
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 293 SFTASNAKRYASTNAARCGNATSAWVTSKYGYITTAHGLSSHVAASIFNTTARIPCIQTG 472
++ ASN + Y S+N S + +K+G T A G + +++ NT + ++T
Sbjct: 158 TYLASNVQIYNSSNELEQFGGESTYFITKHGVRTLAMGFLFNFSSNANNTV--VTPVETA 215
Query: 473 IK 478
IK
Sbjct: 216 IK 217
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 648 WKEYTTNTGRLYYHNIETKESSWVVPK 728
W+ T+TGR Y+ + T+ ++WV P+
Sbjct: 312 WEMRYTDTGRPYFVDHNTRTTTWVDPR 338
Score = 26.6 bits (56), Expect = 7.4
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +3
Query: 648 WKEYTTNTGRLYYHNIETKESSW---VVPKELQEIKDKIXXXXXXQRIVMEVTPSEVPLP 818
W+ TN+ R+Y+ + TK ++W +P L + + + I P PLP
Sbjct: 370 WEMRLTNSARVYFVDHNTKTTTWDDPRLPSALDQDVPQYKCDFRRKLIYFRSQPGMRPLP 429
Query: 819 AE 824
+
Sbjct: 430 GQ 431
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +3
Query: 465 KPELNAPAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKLLSAC 644
KP P PD+ +S+P S APD + ++S + K + +K S K
Sbjct: 154 KPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKP--AKSEPVKQSKPKATETA 211
Query: 645 VWKEYTTNTGRL 680
++ N R+
Sbjct: 212 RPSSFSRNEDRV 223
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 708 TPLSQYYDSKVCQYLWYILSIHKQIIVSQLTFLSRQVFPTSF 583
T SQ+Y SK LW+ +++ +++ L ++ + SF
Sbjct: 158 TRKSQFYSSKFKPLLWFGITLFSTLLIITLLHKGQEFYSRSF 199
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 9.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 287 ASSFTASNAKRYASTNAARCGNATSAWVTSKYGYITTAH-GLSSHVAASIFNTT 445
ASS T S++ +STN+ TS+ +S ++ SS +A+S N+T
Sbjct: 150 ASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNST 203
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 9.8
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 684 SKVCQYLWYILSIHKQIIVSQLTFLSRQVFPTSFVWLQNYSNMFFHQGPYVQTMDY 517
SK+C YL+ + Q+ + T+L R + L YS +F +Q PYV Y
Sbjct: 190 SKLCIYLYEARHLD-QVWDEKSTYLFRLEVCRDGLRLLAYSLLFMYQFPYVSVPIY 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,836,693
Number of Sequences: 5004
Number of extensions: 72676
Number of successful extensions: 223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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