Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C18
(1287 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 99 9e-21
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 42 0.001
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 40 0.004
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 35 0.12
12_01_0794 + 7285100-7285369,7285931-7286338 33 0.49
12_02_1021 + 25364349-25364465,25367237-25367324,25367851-253680... 30 4.5
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 30 4.5
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 29 7.9
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 98.7 bits (235), Expect = 9e-21
Identities = 41/87 (47%), Positives = 55/87 (63%)
Frame = +3
Query: 477 NAPAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKLLSACVWKE 656
+A P + S SS W EH + DG+ YYYN T+QS WEKP +L T E+ ++ WKE
Sbjct: 95 SATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKE 154
Query: 657 YTTNTGRLYYHNIETKESSWVVPKELQ 737
+TT GR YY+N TK+S W +P EL+
Sbjct: 155 FTTQEGRKYYYNKVTKQSKWTIPDELK 181
Score = 50.8 bits (116), Expect = 2e-06
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +3
Query: 507 ANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAE 626
A+ S+ W E +GR YYYN VTKQS W PD+LK + E
Sbjct: 146 ADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARE 185
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 41.9 bits (94), Expect = 0.001
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +3
Query: 465 KPELNAPAPDVAPSANQSSPWSEHKAP-DGRTYYYNSVTKQSLWEKPD-DLKTSAEKLLS 638
K +++P + + W E K P G +Y+YN T + W++P L T +
Sbjct: 172 KQNVDSPVGQIKAAQELPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAPLNTMQHQAPP 231
Query: 639 ACV----WKE-YTTNTGRLYYHNIETKESSWVVP 725
+ W+E +TG+ YY+N T+ + W P
Sbjct: 232 SSSLPENWEEALDQSTGQKYYYNTNTQATQWEPP 265
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 39.9 bits (89), Expect = 0.004
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 483 PAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQS 587
P +P+ + W+EH +P+G YYYNS+T++S
Sbjct: 606 PQQATSPAVPLTCNWTEHTSPEGFKYYYNSITRES 640
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 35.1 bits (77), Expect = 0.12
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 633 LSACVWKEYTTNTGRLYYHNIETKESSWVVPKELQEI 743
L+ W TT+ G+ YY++ + K SSW +P E+ E+
Sbjct: 489 LAGTDWSIVTTSDGKKYYYDNKLKVSSWQLPPEVAEL 525
Score = 30.3 bits (65), Expect = 3.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 525 WSEHKAPDGRTYYYNSVTKQSLWEKPDDL 611
WS DG+ YYY++ K S W+ P ++
Sbjct: 494 WSIVTTSDGKKYYYDNKLKVSSWQLPPEV 522
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 33.1 bits (72), Expect = 0.49
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 483 PAPDVAPSANQSSPWSEHKAPDGRTYYYNSVTKQSLWEKPDDLKTSAEKLLSACV--WKE 656
PAP S +S+ S ++ DG + K WE+P +L W++
Sbjct: 30 PAPGFVSSTTKSTKSSSSES-DGSS---RKKRKHFTWEEPVSHANLELQLNDPLPLDWEQ 85
Query: 657 -YTTNTGRLYYHNIETKESSWVVPKE 731
+GR+YY N +T + SW+ PKE
Sbjct: 86 CLDLQSGRMYYLNRKTLKKSWIRPKE 111
>12_02_1021 +
25364349-25364465,25367237-25367324,25367851-25368004,
25368196-25368271,25368350-25368475,25369400-25369744
Length = 301
Score = 29.9 bits (64), Expect = 4.5
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 795 TPSEVPLPAEPAGSSALDEAMAKTLAAXDTSXXTSIPVPDEIEP 926
T SE+P + P S D A A AA T+ +PDE P
Sbjct: 207 TTSEMPASSMPVSSGVSDAASAAAAAALVEDDWTNCSLPDEAIP 250
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 29.9 bits (64), Expect = 4.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 798 PSEVPLPAEPAGSSALDEAMAKTLAAXDTSXXTSIPVPDEIEPE 929
P+ P+PA+ + +AL A++ A D + + P P E PE
Sbjct: 30 PAPAPVPAQQSAEAALLPALSDLSLADDDTDPSPAPPPVEAPPE 73
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 819 AEPAGSSALDEAMAKTLAAXDTSXXTSIPVPDEIEPEDTVSIN 947
++PAGSS+ + +K LAA D + I V D+ T IN
Sbjct: 750 SKPAGSSSSSSSASKALAAEDDPAASYIVVADQDSASVTSRIN 792
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,953,098
Number of Sequences: 37544
Number of extensions: 476711
Number of successful extensions: 1451
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4004040288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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