Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_C17
         (1363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.29 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   2.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.29
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 1279 PPPPXGGXPPPXXXXPPPGXXXXPPP 1202
            P  P  G PP     PPPG     PP
Sbjct: 31   PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.6 bits (56), Expect = 0.50
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -3

Query: 1280 PPPPXGGXPPPXXGXXPPGGXXXXPP 1203
            P  P  G PP      PPGG    PP
Sbjct: 31   PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.2 bits (55), Expect = 0.66
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
 Frame = -2

Query: 1134 PGGXXRGXPPXXXXXPPXGXPP--PP 1063
            P    RG PP     PP G PP  PP
Sbjct: 31   PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.8 bits (54), Expect = 0.87
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = -1

Query: 1255 PPPXXXXPPPGXXXXPPPPPXGXXXXXXPXXXPGXXPGGPP 1133
            P      P P     P  P  G          PG  PG PP
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 2.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 1069 GGXPRXGXXXXPGGXPPGXPPXGAP 1143
            G  P       PGG PPG PP   P
Sbjct: 37   GSPPNPSQGPPPGG-PPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 4.6
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = -3

Query: 1232 PPGGXXXXPPPPXGXXXXXXPXXPPXXGXXGAPXGGXPGGXP 1107
            P  G     P P           PP     G P GG PG  P
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQ-GPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 8.1
 Identities = 12/36 (33%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
 Frame = -1

Query: 1210 PPPPPXGXXXXXXPXXXPGXXPG-GPPXGXXPGGTP 1106
            P P P        P       P  GPP G  PG  P
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 8.1
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +1

Query: 1222 PPGGXXPXXGGGXPPXGGGGXXPXXXP 1302
            P  G  P    G PP G  G  P   P
Sbjct: 34   PQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 864 PPPPPPXXPGP 832
           PPPPPP   GP
Sbjct: 343 PPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 903  GGXPXXPPXGGXXPPPPPP 847
            G     P  G   PPPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,614
Number of Sequences: 438
Number of extensions: 16929
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 47184759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)