Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C13
(1278 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 68 2e-12
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 65 2e-11
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 59 1e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 54 4e-08
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 53 1e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 49 1e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 47 5e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 47 6e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 46 1e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 44 6e-05
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 42 1e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 2e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 42 2e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 2e-04
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 40 0.001
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 39 0.001
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.003
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 38 0.004
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.012
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 35 0.021
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.064
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 33 0.064
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.26
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 30 0.79
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 1.4
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 1.4
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 29 1.8
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 28 2.4
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 28 2.4
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 4.2
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 4.2
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 27 4.2
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 27 5.6
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 27 5.6
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 27 5.6
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 27 5.6
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 27 7.3
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 7.3
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 27 7.3
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 27 7.3
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 9.7
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 26 9.7
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 26 9.7
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 9.7
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 68.1 bits (159), Expect = 2e-12
Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 3/181 (1%)
Frame = +1
Query: 109 YREHDLRPFFEKYGEIEDMYLPRDR-NTGETRGIAYIKYAKTSSAATAIEELHMTTLLDN 285
Y E D+ F YG + D+ P R NT R Y++ K A A++ LH LL+
Sbjct: 677 YDELDITKLFSAYGNVVDVRFPSLRYNTN--RRFCYVQMRKPDEAHNALQ-LHKK-LLEE 732
Query: 286 HKPIKVMVASD-KNDYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDK 459
PI+V ++ + +S + + R L++ + + EK++ +F YG+VESVR+ K
Sbjct: 733 KYPIQVFISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI--PK 790
Query: 460 LTDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFATPKDELKRPRNSLEGLDCYSSNSNL 639
++ KGF YV TT + A K L +PR SLE SSN N
Sbjct: 791 RFNQHKGFGYVVMTTNQDAENALSAAGKQLGN--RVLNVVLSKPRESLEKTR-VSSNDNR 847
Query: 640 T 642
T
Sbjct: 848 T 848
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 65.3 bits (152), Expect = 2e-11
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 1/190 (0%)
Frame = +1
Query: 115 EHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKP 294
+ LR +FE++GE+ D + RD TG +RG ++ + + + H H
Sbjct: 176 DDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEH-------HLD 228
Query: 295 IKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDE 471
K++ K +K ++F+ VP TE+E R +F+ +G+V L DK T
Sbjct: 229 GKII--DPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGR 286
Query: 472 SKGFAYVNFTTFSETAKAFEQCDKTYKAIFATPKDELKRPRNSLEGLDCYSSNSNLTQSH 651
+GF +V + S Q Y I P E+KR + ++L SH
Sbjct: 287 PRGFGFVTYENESAVEATMSQ---PYITIHGKPV-EVKRA----------TPKASLRDSH 332
Query: 652 VYADHGHHVN 681
HG+H N
Sbjct: 333 DRHQHGYHGN 342
Score = 35.5 bits (78), Expect = 0.016
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 388 TEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
T+ +R YF +G+V + RD T S+GF ++ F
Sbjct: 175 TDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 59.3 bits (137), Expect = 1e-09
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Frame = +1
Query: 121 DLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSS--AATAIEELHM------TTL 276
+L FFE+ G + D + RD+ +G ++G+AY+++ S AA A+ + L
Sbjct: 255 ELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQL 314
Query: 277 LDNHKPIKVMVASDKNDYQSNSYDKYRRLFIKVPKTMTEKEIRQYFSSYGKVESVRLQRD 456
+ K K A++ S +R + +T+++++ F +G +E V LQRD
Sbjct: 315 TEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD 374
Query: 457 KLTDESKGFAYVNFTTFSETAKAFEQ 534
+ SKGF Y+ + A E+
Sbjct: 375 D-QNRSKGFGYIQYRNPISARNALEK 399
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 355 RRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
R +F+ ++ +T +E+ +F G V ++ RDK++ SKG AYV F
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 54.0 bits (124), Expect = 4e-08
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Frame = +1
Query: 178 DRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKVMVASDKNDYQS---NSYD 348
+++ GET A TA E L D P A DK + QS S +
Sbjct: 40 EKDAGETDSDAGSIAMNVHQLDTAGEPLQSMNE-DEVDPNNESTALDKKEPQSAPEGSEN 98
Query: 349 KYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKA 525
LF+ + M E E++Q FS +G V VR+ R+ +T S+GF +++F+T E A
Sbjct: 99 LGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSA 158
Query: 526 FEQCD--KTYKAIFATPKDELKRPRNSLEG 609
+ + + Y + K + RP + G
Sbjct: 159 IDNLNSQEFYGRVLNVQKAKRSRPHSPTPG 188
Score = 34.3 bits (75), Expect = 0.037
Identities = 13/55 (23%), Positives = 31/55 (56%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH 264
+ + +E +L+ F K+G + + + R+ T +RG ++ ++ A +AI+ L+
Sbjct: 109 ASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLN 163
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 52.8 bits (121), Expect = 1e-07
Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Frame = +1
Query: 67 KPPYSRIFIV-CSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAA 243
K ++ ++I + E + F ++GEI + L +D+N + RG ++ YA A
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQ 315
Query: 244 TAIEELHMTTLLDNHKPIKVMVASDKNDYQSNSYDKYRR-------------LFIK-VPK 381
A++EL+ K + V A K++ + +Y + LFIK +
Sbjct: 316 KAVDELNDKEY--KGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQD 373
Query: 382 TMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDK 543
+ ++ ++ FS++G + S ++ D+ +SKGF +V +TT E KA + ++
Sbjct: 374 EVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEMNQ 426
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +1
Query: 382 TMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKT 546
++TE + + F+S G V S+R+ RD +T S G+AYVNF + KA ++ + T
Sbjct: 90 SVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYT 144
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 49.2 bits (112), Expect = 1e-06
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Frame = +1
Query: 202 GIAYIKYAKTSSAATAIEELHMTTLLDNHK-PIKV----MVASDKNDYQSNSYDKYRRLF 366
G ++++ +SA A+ ++ +LD HK IK+ + A+ + Q +S K ++
Sbjct: 666 GFGFVEFKDKASAVAAMHAMN-GFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKIL 724
Query: 367 IK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDK 543
IK +P T+K+++ +YG++ SVR+ + K ++GFA+ F T E A A
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPK-KFDRSARGFAFAEFVTAREAANAMRALKN 783
Query: 544 TY 549
T+
Sbjct: 784 TH 785
Score = 45.2 bits (102), Expect = 2e-05
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +1
Query: 355 RRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFE 531
+RLF++ + + E +++ F +G++E V + DK T+ KGFAY++F + +A+
Sbjct: 323 KRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYL 382
Query: 532 QCD 540
+ D
Sbjct: 383 ELD 385
Score = 40.7 bits (91), Expect = 4e-04
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 115 EHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEEL 261
E DL+ F +G++E +++P D+ T +G AYI + A A EL
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 47.2 bits (107), Expect = 5e-06
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Frame = +1
Query: 136 FEKYGEIEDMYLPRDRNTGETRGIAYIKY-----AKTSSAATAIEEL--HMTTL-LDNHK 291
FE+YG I + D +G ++G Y+ + AK + AA +E+ M L L N +
Sbjct: 283 FEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPR 342
Query: 292 PIKVMVASDKN--DYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKL 462
P + + ++ + +F+ + TE ++ F G ++S+RL D
Sbjct: 343 PANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQ 402
Query: 463 TDESKGFAYVNFTTFSETAKAFE 531
+ KGF YV F+ K E
Sbjct: 403 SGRLKGFGYVTFSDIDSAKKCVE 425
Score = 34.7 bits (76), Expect = 0.028
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 115 EHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIE 255
E DL F G+I+ + LP D +G +G Y+ ++ SA +E
Sbjct: 379 EDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE 425
Score = 33.5 bits (73), Expect = 0.064
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +1
Query: 406 QYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFATPKDELK 585
Q F YG + R+ D + SKG+ YV+F T E AKA + T + +L
Sbjct: 281 QEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET-PEAAKAAVAANGTKEIDGRMVNLDLS 339
Query: 586 RPR 594
PR
Sbjct: 340 NPR 342
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.8 bits (106), Expect = 6e-06
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Frame = +1
Query: 172 PRDRNTGETRGIA-YIKYAKTSSA----ATAIEELHMTTLLDNHKP----IKVMVASDKN 324
P R+T GIA Y+KYA++ ++EE + + K ++ M+
Sbjct: 29 PEKRSTPRVSGIAKYLKYAQSHDQQYHPTESLEEKRLRLRDEKQKQQRERLRSMIKVWDP 88
Query: 325 DYQSNSY-DKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
D+ + D Y+ +F+ ++ E +I + F+ YG +E +R+ R+K+T +S G+A+V F
Sbjct: 89 DHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
Score = 34.3 bits (75), Expect = 0.037
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 73 PYSRIFIV-CSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAK 228
PY +F+ S +E D+ F +YG IE + + R++ TG++ G A++ + +
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFER 150
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1
Query: 115 EHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLD 282
E D+ F ++GE D+ L RD+ TG+++G A++KY S A++ + LLD
Sbjct: 44 EDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLD 99
Score = 35.9 bits (79), Expect = 0.012
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 385 MTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFE 531
+ E +I FS +G+ + L RDK T +SKGFA++ + T A +
Sbjct: 42 LNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVD 90
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 43.6 bits (98), Expect = 6e-05
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +1
Query: 280 DNHKPIKVMVASDKNDYQSNSYDKYRRLFIKVPKTMTEKEIRQYFSSYGKVESVRLQRDK 459
D K IK V+ +KN + RL P EK++R YFS +G V +R+ R++
Sbjct: 85 DAEKTIKKKVSENKNLQKKKGVLYVGRL----PHGFYEKQMRMYFSQFGPVLRLRMSRNR 140
Query: 460 LTDESKGFAYVNF 498
T SK +A++ F
Sbjct: 141 KTGSSKHYAFIEF 153
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 42.3 bits (95), Expect = 1e-04
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +1
Query: 124 LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKV 303
+ F YG ++D+++ N+ A + Y SSA A + LH + +NH P++V
Sbjct: 16 IHALFSAYGNVKDIWMLSPDNS------AIVSYESLSSAIVARDALHNRPVFENHGPVQV 69
Query: 304 MVASDKNDYQ 333
M+A ++Y+
Sbjct: 70 MLAKPSSNYE 79
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.9 bits (94), Expect = 2e-04
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Frame = +1
Query: 106 QYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTL--- 276
Q ++ DL FF G I+ + + TGE RG ++ ++ A A +EL L
Sbjct: 15 QTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGR 74
Query: 277 ---LDNHKPIK-VMVASDKNDYQSNS--YDKYRRLFIK-VPKTMTE-KEIRQYFSSYGKV 432
LD P K V +D+N + D RL I+ +P ++ + + + +FS +GKV
Sbjct: 75 ILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKV 134
Query: 433 ESVRLQRDKLTDESKGFAYV 492
+++ K GFA+V
Sbjct: 135 REIKIP-TKGGGRMCGFAFV 153
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.9 bits (94), Expect = 2e-04
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +1
Query: 208 AYIKYAKTSSAATAIEELHMTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFI-KVPKT 384
AYI + +SSA +A+ L+ T +D H ++V S D R +F+ +
Sbjct: 229 AYIVFRDSSSARSALS-LNGTMFMDRH--LRVDSVS-----HPMPQDTKRCVFVGNLAFE 280
Query: 385 MTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
E+ + +YF G ++ VR+ RD T+ KGFAY+ F
Sbjct: 281 AEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 41.5 bits (93), Expect = 2e-04
Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 13/178 (7%)
Frame = +1
Query: 103 KQYREHDLRPFFEKYGEIEDMYLPRDRNTG-ETRGIAYIKYAKTSSAATAIE----ELHM 267
K+ E +++P + +I +++P + + +G AY+ +A + A++ L+
Sbjct: 134 KEVSEENIKPITTE--QITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNG 191
Query: 268 TTLLDNH------KPIKVMVASDKN-DYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSY 423
+L +P K K QS+ + LF+ + T+ +++++F
Sbjct: 192 RNILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQV 251
Query: 424 GKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFATPKDELKRPRN 597
G++ VRL + T + KGF +V+F KA E +++ + +D KR RN
Sbjct: 252 GQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNSWRLEYG--EDRSKRMRN 307
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +1
Query: 55 RNDDKPPYSRIFIV-CSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKT 231
++ K P S +F+ + + DL+ F + G+I + L +TG+ +G ++ +
Sbjct: 220 QSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDI 279
Query: 232 SSAATAIEELHMTTLLD 282
+ A+E H + L+
Sbjct: 280 DTCMKAMELGHNSWRLE 296
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +1
Query: 373 VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFT 501
V ++T +E++ +F+S G V V + DK T KGFAY+ F+
Sbjct: 62 VDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +1
Query: 391 EKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCD 540
E+E+R F +G ++ V L +DK T +KGFA+V++ KA ++ D
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLD 264
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 37.9 bits (84), Expect = 0.003
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 286 HKPIKVMVASDKNDYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKL 462
HK +K KN+ D+ LF+ +PK + + ++ +F G+V SVR+ DK
Sbjct: 75 HKTLKSKRQKGKNN------DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKT 128
Query: 463 TDESKGFAYVNF 498
+ KG+A+V F
Sbjct: 129 SGRQKGYAFVEF 140
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 37.5 bits (83), Expect = 0.004
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Frame = +1
Query: 184 NTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKVMVASDK------NDYQSNSY 345
N G+ R I I + ++ A E H + + +P+K+ A ++ SN+
Sbjct: 239 NPGKRRII--ITFLDSADAFFFYERYHPRGFIFHGRPLKLTFARPSPLPESIQNFCSNTA 296
Query: 346 DKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAK 522
R +FI +P + EKEI + F +GK+E +++ K A+V+F + K
Sbjct: 297 AS-RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL------SKKNIAFVHFLNIRDAIK 349
Query: 523 AFE--QCDKTYKA--IFATPKDELKRPRNSLEGLDCYSSNSN 636
CD Y + IF D S + C++S N
Sbjct: 350 VVRTLSCDPDYHSWRIF-FGSDRCANHPPSFDERSCFTSKQN 390
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 364 FIKVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKA 525
F + ++T +E+ YG++ES++ L + S GF V +T S KA
Sbjct: 504 FSHISDSLTTEELELILRQYGEIESIKY----LKNRSSGF--VAYTNISNAMKA 551
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 35.9 bits (79), Expect = 0.012
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +1
Query: 70 PPYSRIFIV-CSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAAT 246
PP + +F+ + ++ DL F ++G+I + RD+ TG++ A+I++ S
Sbjct: 241 PPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Query: 247 AIEELHMTTLLDN--HKPIKVMVASDKNDYQSN 339
A ++ + D+ H VA + Y SN
Sbjct: 301 AYFKMQNVLIDDSRIHVDFSQSVARYRQYYNSN 333
Score = 35.1 bits (77), Expect = 0.021
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 361 LFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAF 528
LF+ K+ ++++ FS +GK+ S ++ RDK T +S +A++ F KA+
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAY 302
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 35.1 bits (77), Expect = 0.021
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 385 MTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTT 504
+TE ++ +F V S+RL D LT+ S+GF YV F T
Sbjct: 105 LTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFET 142
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 33.5 bits (73), Expect = 0.064
Identities = 16/76 (21%), Positives = 39/76 (51%)
Frame = +1
Query: 49 LARNDDKPPYSRIFIVCSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAK 228
L+R+ ++P + + ++ + + F YG I+ +++P + + +G YI+Y
Sbjct: 90 LSRSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVY 149
Query: 229 TSSAATAIEELHMTTL 276
AA A+++++ L
Sbjct: 150 HDQAANAVDKMNNAEL 165
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.5 bits (73), Expect = 0.064
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 136 FEKYGEIEDMYLPRD---RNTGETRGIAYIKYAKTSSAATAIEEL 261
F YG + D+ +PR RN+G G +++Y+ SA A+EE+
Sbjct: 448 FSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEM 492
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.5 bits (68), Expect = 0.26
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 73 PYSRIFIV-CSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATA 249
P +++F+ S LR F+ +GE+ D+ L + TG + G+ I + K SS + A
Sbjct: 92 PPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVA 151
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 29.9 bits (64), Expect = 0.79
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 806 TILNSLSRCFCSTGGVHLTDTVSKSCSLVFEINVK*SLLNSS 681
+ILN + TG + L + + SC+L F + +K +LL+SS
Sbjct: 287 SILNLSDKFLSKTGTLRLQEKLGTSCNLFFVLVLKLALLSSS 328
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 1.4
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 274 LLDNHKPIKVMVASDKNDYQSNSYDKYRRLFIK---VPKTMTEKEIRQYFSSYGKVESVR 444
LLD+++P K D+N S + I P+ + E +++ KV +V
Sbjct: 44 LLDSYRP-KGNYGRDRNSPLSRHIGVPNQEIILQGLTPEILEEHIELALYATGAKVSTVT 102
Query: 445 LQRDKLTDESKGFAYVNFTTFSET 516
L R+K T +S+ FA+ F + ++
Sbjct: 103 LIREKETQKSRCFAFAKFVSLQDS 126
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 292 PIKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTD 468
P ++ D S + R ++I+ +P +++ + Y + +GKV S + D T+
Sbjct: 275 PSMFPMSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETN 334
Query: 469 ESKGFAYVNF 498
KG+ + F
Sbjct: 335 LCKGYGFACF 344
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 272 PYLTITN--PSKLWSPLTKMTIKVTVTTNTEDYLSKFPKR*LRKKFGNIFPVMEKLSQ 439
P++ I N P+ LW P+T + T T +YL K K + +G FP+ + S+
Sbjct: 22 PWIRIENIKPTPLWKPITFAVGVGSATFYTANYLDKRRKNYPKSSYG--FPIPQTSSR 77
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 370 KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAF--EQCDK 543
K + + +R +SS+G +++V +Q+D ++ ++ + F T S A E+ K
Sbjct: 174 KYADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFETLSSAYSAINAEKPSK 233
Query: 544 TYKAIFATP 570
Y + P
Sbjct: 234 IYDVQWLKP 242
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 361 LFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
LFIK + +T +E+ F YG V +RL T +++G A+V + + +A E+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGN---TVQTRGTAFVVYENVQDARRACEK 69
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 280 DNHKPIKVMVASDKNDYQSNSYDKYRRLFIKVPKTMTEKEI 402
D+ + + AS++N Y+ +YD+ RL K+ + + K +
Sbjct: 414 DSIAKLNELTASNENHYELKTYDRAERLRQKIQEVSSNKRL 454
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 124 LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHK 291
L+ FE++GEIE + R++N A++ + +SA AI+ + +N++
Sbjct: 430 LKEDFEEFGEIEYVNFFREKN------CAFVNFTSLASAINAIDRIKQKKGYENYR 479
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 622 SSNSNLTQSHVYADHGHHVNDEFNKD 699
SSNSNL +S HH N E +KD
Sbjct: 268 SSNSNLKKSSESGSTNHHNNHESDKD 293
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 27.1 bits (57), Expect = 5.6
Identities = 19/92 (20%), Positives = 36/92 (39%)
Frame = +1
Query: 550 KAIFATPKDELKRPRNSLEGLDCYSSNSNLTQSHVYADHGHHVNDEFNKDYLTLISKTKE 729
K + TPK KR R ++ ++ HV +N+ K L ++ ++
Sbjct: 102 KLVEMTPKGLKKRKRVQIQEGSVSTNTKKRMDGHVVGSSAPAINNGKGKQLLEMMGWSRG 161
Query: 730 QDFDTVSVKCTPPVLQKHLERLFNIVPGMIEF 825
+ + + PV+ + LF I+ G F
Sbjct: 162 KGLGSENQGMVDPVVAVKEKLLFTIILGKFLF 193
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = +1
Query: 673 HVNDEFNKDYLTLISKTKEQDFDTVSVKCTPPVLQKHLERLFNIVPGMIEFKYTMDQGN- 849
+++ E N+ + + + + F +V P L + + RLF G I +D G
Sbjct: 296 YIHMEDNQTFSRVFAVANQIKFAPATVITIPNQLSRPVFRLFTFAEGEISAIVILDDGTF 355
Query: 850 -RVCRASVTYDSQKAAAYSVETIII*ISIWRGHQ 948
+ + ++A AY++ I+ ++ +Q
Sbjct: 356 FSFSNTELVWKREEALAYAINPSILPTTLLTSYQ 389
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 634 NLTQSHVYADHGHHVNDEFNKDYLTLISKTKEQDF-DTVSVKCT 762
N +H VNDE N D + I+K + D+ DT+ KC+
Sbjct: 626 NFITTHPSYKQDSVVNDEINYDLIRRIAKIVDGDYDDTLLGKCS 669
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 806 TILNSLSRCFCSTGGVHLTDTVSKSCSLVFEINVK*SLLNSSL 678
+IL+SLSR F T D + + LV ++N S +NS L
Sbjct: 120 SILSSLSRQFFHTHRAFKADVMDSNGQLVLQLNRPFSWINSRL 162
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 385 MTEKEIRQYFSSYGKVESVRLQRDKLTDESK 477
+TEK+I +FS GKV ++ ++ T +K
Sbjct: 14 VTEKQISDFFSFCGKVSNISTEKSGETQTAK 44
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 373 VPKTMTEKEIRQYFSSYGKVESV 441
+ ++++EI ++FS YG+VES+
Sbjct: 24 IDSRLSDEEIIKHFSKYGQVESI 46
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEEL 261
S Q R +L+ F + G + + + N G ++G A I+Y+ A TAI+ L
Sbjct: 74 SYQVRWFELKEFMGQVGNVLNCEILNLPN-GLSKGCAIIEYSTAEEARTAIKTL 126
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 824 NSIIPGTILNSLSRCFCSTGGVHLTDTVSKSCSLVFEINVK*SLLNSSLT*W 669
N I P I + ++ F ST ++ +S+ C + SLLN LT W
Sbjct: 482 NGIHPEVIASHTAQSFKSTHYCNILPLISEICQEYGLLKTDGSLLNPELTKW 533
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 73 PYSRIFIVCSKQYREHDLRPFFEKYGEIEDMYL 171
PY +F YR+ + +P + K GEI D L
Sbjct: 363 PYKGVFYNTRPPYRKLEKQPSYIKGGEIRDFQL 395
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 631 NYWNSSQVLLNCSWAF*AHLSVWQK*LYTFYHTAQTLS 518
+YW +L N H+ ++ LY F HT TLS
Sbjct: 113 DYWIFINILHNALLVLFPHVDTERRGLYRFRHTVFTLS 150
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 565 TPKDELKRPRNSLEGLDCYSSNSNLTQSHVYADHGHHVNDE 687
T KD+ R R S +D ++S N+TQ +V A + N+E
Sbjct: 12 TVKDDSTRSRGS--DVDSFTSTDNVTQINVEAAISENKNEE 50
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = +1
Query: 376 PKTMTEKEIR-----QYFSSYGKVESVRLQRDKLTDESKGF--AYVNFTTFSETAKAFEQ 534
PK E+ I +YF YGK+ + + + + + G Y+ + + A+A
Sbjct: 125 PKVANEENINVLKGPEYFGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAA 184
Query: 535 CD 540
D
Sbjct: 185 ID 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,597,751
Number of Sequences: 5004
Number of extensions: 93172
Number of successful extensions: 347
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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