Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C13
(1278 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 69 9e-12
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 69 9e-12
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 69 9e-12
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 67 3e-11
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 67 3e-11
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 67 3e-11
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 67 3e-11
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 67 3e-11
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 67 3e-11
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 64 2e-10
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 64 2e-10
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 64 2e-10
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 64 2e-10
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 64 2e-10
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 62 6e-10
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 62 6e-10
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 62 6e-10
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 62 6e-10
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 62 1e-09
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 62 1e-09
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 62 1e-09
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 62 1e-09
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 58 1e-08
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 57 3e-08
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 57 3e-08
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 54 3e-07
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 54 3e-07
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 54 3e-07
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 54 3e-07
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 52 1e-06
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 49 8e-06
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 48 2e-05
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 47 3e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 46 8e-05
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 45 1e-04
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 45 1e-04
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 44 2e-04
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 44 2e-04
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 44 3e-04
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 43 4e-04
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 43 4e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 43 5e-04
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 43 5e-04
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 41 0.002
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 41 0.002
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 40 0.004
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 39 0.007
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 39 0.007
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 39 0.007
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 37 0.027
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 36 0.047
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 36 0.047
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 36 0.047
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 36 0.062
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 36 0.062
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 36 0.062
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 36 0.062
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 36 0.062
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 36 0.081
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 34 0.19
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 34 0.19
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 34 0.19
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 34 0.19
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 33 0.43
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 33 0.57
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 32 0.76
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 32 0.76
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 32 0.76
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 31 1.3
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 31 1.3
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 31 1.3
U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical pr... 31 1.3
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 31 1.3
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 31 1.3
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 31 2.3
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 4.0
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 4.0
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 4.0
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 4.0
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 29 5.3
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 29 7.1
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 29 7.1
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 29 7.1
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 9.3
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 29 9.3
L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical pr... 29 9.3
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 9.3
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 68.5 bits (160), Expect = 9e-12
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Frame = +1
Query: 115 EHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKP 294
+ ++R F GEIE L RD+ TG++ G ++ Y + A A+ + L +K
Sbjct: 55 QEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRL--QNKT 112
Query: 295 IKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDE 471
IKV A ND S L++ +PK+MT E+ F +G++ + R+ D +T
Sbjct: 113 IKVSYARPSNDQIKGS-----NLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGL 167
Query: 472 SKGFAYVNFTTFSETAKAFE 531
SKG +V F E A +
Sbjct: 168 SKGVGFVRFDKKDEADVAIK 187
Score = 55.2 bits (127), Expect = 9e-08
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Frame = +1
Query: 373 VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQC----- 537
+P+ MT++E+R F+S G++ES +L RDK+T +S G+ +VN+ + +A
Sbjct: 49 LPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRL 108
Query: 538 -DKTYKAIFATP-KDELKRPRNSLEGLDCYSSNSNLTQSHVYADHGHHVNDEFNKDYLTL 711
+KT K +A P D++K + G+ + L ++ G + D +T
Sbjct: 109 QNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHEL--ESIFRPFGQIITSRILSDNVTG 166
Query: 712 ISK 720
+SK
Sbjct: 167 LSK 169
Score = 34.3 bits (75), Expect = 0.19
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 118 HDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH 264
H+L F +G+I + D TG ++G+ ++++ K A AI+ L+
Sbjct: 142 HELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLN 190
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 68.5 bits (160), Expect = 9e-12
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLL 279
S Q +LR +F ++GE+ + + RD T RG +I + SS + L
Sbjct: 53 SWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHE--L 110
Query: 280 DNHKPIKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRD 456
D K I VA K Q+ K +++FI + T T ++++QYF +YGKVE L D
Sbjct: 111 DGKK-IDPKVAFPKRT-QAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFD 168
Query: 457 KLTDESKGFAYVNFTTFSETAKAFE 531
K T +GF +V F + K E
Sbjct: 169 KATQRHRGFGFVTFDSDEVADKVCE 193
Score = 44.0 bits (99), Expect = 2e-04
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +1
Query: 232 SSAATAIEELHMTTL-LDNHKPIKVMVASDKNDYQSNSYDKYRRLFIKVPKTMTEKEIRQ 408
S+ ATA+ L T+ +D H+ ++ SD D S D + + T + +R
Sbjct: 6 STGATAVATLRETSPPVDGHEEARLNADSD--DGSHGSQDPGKMFIGGLSWQTTAENLRD 63
Query: 409 YFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAK 522
YF +G+V + RD T ++GF ++ F S K
Sbjct: 64 YFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDK 101
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 68.5 bits (160), Expect = 9e-12
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLL 279
S Q +LR +F ++GE+ + + RD T RG +I + SS + L
Sbjct: 53 SWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHE--L 110
Query: 280 DNHKPIKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRD 456
D K I VA K Q+ K +++FI + T T ++++QYF +YGKVE L D
Sbjct: 111 DGKK-IDPKVAFPKRT-QAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFD 168
Query: 457 KLTDESKGFAYVNFTTFSETAKAFE 531
K T +GF +V F + K E
Sbjct: 169 KATQRHRGFGFVTFDSDEVADKVCE 193
Score = 44.0 bits (99), Expect = 2e-04
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +1
Query: 232 SSAATAIEELHMTTL-LDNHKPIKVMVASDKNDYQSNSYDKYRRLFIKVPKTMTEKEIRQ 408
S+ ATA+ L T+ +D H+ ++ SD D S D + + T + +R
Sbjct: 6 STGATAVATLRETSPPVDGHEEARLNADSD--DGSHGSQDPGKMFIGGLSWQTTAENLRD 63
Query: 409 YFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAK 522
YF +G+V + RD T ++GF ++ F S K
Sbjct: 64 YFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDK 101
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 66.9 bits (156), Expect = 3e-11
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Frame = +1
Query: 103 KQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLD 282
+Q+ E D R FEKYG + + RD++T ++G ++ + A A LH +++
Sbjct: 64 RQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIE 123
Query: 283 N-HKPIKVMVASDKNDYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRD 456
H P+++ A +N + R+LFI ++ K E+ +R+ F+ +G +E + RD
Sbjct: 124 GMHHPVQMKPADTENRNE-------RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Query: 457 KLTDESKGFAYVNFTTFS 510
+ +S+G A+V FT S
Sbjct: 177 Q-DGKSRGCAFVTFTNRS 193
Score = 52.0 bits (119), Expect = 9e-07
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLL 279
SK++ E +LR F K+G IED + RD++ G++RG A++ + S A A +E+H + +
Sbjct: 150 SKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKEMHHSQTM 208
Query: 280 DN-HKPIKVMVASDKND 327
+ P+ V A + D
Sbjct: 209 EGCSAPLVVKFADTQKD 225
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 358 RLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
++F+ ++P+ E + R+ F YG V S + RDK T SKG +V F
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 66.9 bits (156), Expect = 3e-11
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Frame = +1
Query: 103 KQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLD 282
+Q+ E D R FEKYG + + RD++T ++G ++ + A A LH +++
Sbjct: 64 RQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIE 123
Query: 283 N-HKPIKVMVASDKNDYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRD 456
H P+++ A +N + R+LFI ++ K E+ +R+ F+ +G +E + RD
Sbjct: 124 GMHHPVQMKPADTENRNE-------RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Query: 457 KLTDESKGFAYVNFTTFS 510
+ +S+G A+V FT S
Sbjct: 177 Q-DGKSRGCAFVTFTNRS 193
Score = 52.0 bits (119), Expect = 9e-07
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLL 279
SK++ E +LR F K+G IED + RD++ G++RG A++ + S A A +E+H + +
Sbjct: 150 SKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKEMHHSQTM 208
Query: 280 DN-HKPIKVMVASDKND 327
+ P+ V A + D
Sbjct: 209 EGCSAPLVVKFADTQKD 225
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 358 RLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
++F+ ++P+ E + R+ F YG V S + RDK T SKG +V F
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 66.9 bits (156), Expect = 3e-11
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Frame = +1
Query: 103 KQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLD 282
+Q+ E D R FEKYG + + RD++T ++G ++ + A A LH +++
Sbjct: 64 RQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIE 123
Query: 283 N-HKPIKVMVASDKNDYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRD 456
H P+++ A +N + R+LFI ++ K E+ +R+ F+ +G +E + RD
Sbjct: 124 GMHHPVQMKPADTENRNE-------RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Query: 457 KLTDESKGFAYVNFTTFS 510
+ +S+G A+V FT S
Sbjct: 177 Q-DGKSRGCAFVTFTNRS 193
Score = 52.0 bits (119), Expect = 9e-07
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLL 279
SK++ E +LR F K+G IED + RD++ G++RG A++ + S A A +E+H + +
Sbjct: 150 SKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKEMHHSQTM 208
Query: 280 DN-HKPIKVMVASDKND 327
+ P+ V A + D
Sbjct: 209 EGCSAPLVVKFADTQKD 225
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 358 RLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
++F+ ++P+ E + R+ F YG V S + RDK T SKG +V F
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 66.9 bits (156), Expect = 3e-11
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Frame = +1
Query: 103 KQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLD 282
+Q+ E D R FEKYG + + RD++T ++G ++ + A A LH +++
Sbjct: 64 RQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIE 123
Query: 283 N-HKPIKVMVASDKNDYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRD 456
H P+++ A +N + R+LFI ++ K E+ +R+ F+ +G +E + RD
Sbjct: 124 GMHHPVQMKPADTENRNE-------RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Query: 457 KLTDESKGFAYVNFTTFS 510
+ +S+G A+V FT S
Sbjct: 177 Q-DGKSRGCAFVTFTNRS 193
Score = 49.6 bits (113), Expect = 5e-06
Identities = 22/61 (36%), Positives = 39/61 (63%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLL 279
SK++ E +LR F K+G IED + RD++ G++RG A++ + S A A +E+H + +
Sbjct: 150 SKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKEMHHSQTM 208
Query: 280 D 282
+
Sbjct: 209 E 209
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 358 RLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
++F+ ++P+ E + R+ F YG V S + RDK T SKG +V F
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 66.9 bits (156), Expect = 3e-11
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Frame = +1
Query: 103 KQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLD 282
+Q+ E D R FEKYG + + RD++T ++G ++ + A A LH +++
Sbjct: 64 RQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIE 123
Query: 283 N-HKPIKVMVASDKNDYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRD 456
H P+++ A +N + R+LFI ++ K E+ +R+ F+ +G +E + RD
Sbjct: 124 GMHHPVQMKPADTENRNE-------RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Query: 457 KLTDESKGFAYVNFTTFS 510
+ +S+G A+V FT S
Sbjct: 177 Q-DGKSRGCAFVTFTNRS 193
Score = 52.0 bits (119), Expect = 9e-07
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLL 279
SK++ E +LR F K+G IED + RD++ G++RG A++ + S A A +E+H + +
Sbjct: 150 SKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKEMHHSQTM 208
Query: 280 DN-HKPIKVMVASDKND 327
+ P+ V A + D
Sbjct: 209 EGCSAPLVVKFADTQKD 225
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 358 RLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
++F+ ++P+ E + R+ F YG V S + RDK T SKG +V F
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 66.9 bits (156), Expect = 3e-11
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Frame = +1
Query: 103 KQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLD 282
+Q+ E D R FEKYG + + RD++T ++G ++ + A A LH +++
Sbjct: 64 RQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIE 123
Query: 283 N-HKPIKVMVASDKNDYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRD 456
H P+++ A +N + R+LFI ++ K E+ +R+ F+ +G +E + RD
Sbjct: 124 GMHHPVQMKPADTENRNE-------RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Query: 457 KLTDESKGFAYVNFTTFS 510
+ +S+G A+V FT S
Sbjct: 177 Q-DGKSRGCAFVTFTNRS 193
Score = 52.0 bits (119), Expect = 9e-07
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLL 279
SK++ E +LR F K+G IED + RD++ G++RG A++ + S A A +E+H + +
Sbjct: 150 SKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVATKEMHHSQTM 208
Query: 280 DN-HKPIKVMVASDKND 327
+ P+ V A + D
Sbjct: 209 EGCSAPLVVKFADTQKD 225
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 358 RLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
++F+ ++P+ E + R+ F YG V S + RDK T SKG +V F
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 64.5 bits (150), Expect = 2e-10
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +1
Query: 124 LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKV 303
+R F+ ++GEI D+ + RD T +RG ++ ++ + A+++ P +
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 98
Query: 304 MVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKG 480
+ DKN +SN K RL++ V + TE + +YF+ YG V + DK T + +G
Sbjct: 99 VPRDDKNRSESNVSTK--RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 156
Query: 481 FAYVNF 498
F +V F
Sbjct: 157 FGFVTF 162
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 64.5 bits (150), Expect = 2e-10
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +1
Query: 124 LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKV 303
+R F+ ++GEI D+ + RD T +RG ++ ++ + A+++ P +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 304 MVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKG 480
+ DKN +SN K RL++ V + TE + +YF+ YG V + DK T + +G
Sbjct: 61 VPRDDKNRSESNVSTK--RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 118
Query: 481 FAYVNF 498
F +V F
Sbjct: 119 FGFVTF 124
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 64.5 bits (150), Expect = 2e-10
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +1
Query: 124 LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKV 303
+R F+ ++GEI D+ + RD T +RG ++ ++ + A+++ P +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 304 MVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKG 480
+ DKN +SN K RL++ V + TE + +YF+ YG V + DK T + +G
Sbjct: 61 VPRDDKNRSESNVSTK--RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 118
Query: 481 FAYVNF 498
F +V F
Sbjct: 119 FGFVTF 124
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 64.5 bits (150), Expect = 2e-10
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +1
Query: 124 LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKV 303
+R F+ ++GEI D+ + RD T +RG ++ ++ + A+++ P +
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 98
Query: 304 MVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKG 480
+ DKN +SN K RL++ V + TE + +YF+ YG V + DK T + +G
Sbjct: 99 VPRDDKNRSESNVSTK--RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 156
Query: 481 FAYVNF 498
F +V F
Sbjct: 157 FGFVTF 162
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 64.5 bits (150), Expect = 2e-10
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +1
Query: 124 LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKV 303
+R F+ ++GEI D+ + RD T +RG ++ ++ + A+++ P +
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 98
Query: 304 MVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKG 480
+ DKN +SN K RL++ V + TE + +YF+ YG V + DK T + +G
Sbjct: 99 VPRDDKNRSESNVSTK--RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRG 156
Query: 481 FAYVNF 498
F +V F
Sbjct: 157 FGFVTF 162
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 62.5 bits (145), Expect = 6e-10
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH----- 264
S + LR F+ +G++ D + RD NT +++G ++ Y K A AIE+++
Sbjct: 30 SSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLG 89
Query: 265 MTTLLDNHKPIKVMVASDKNDYQSNSYDK-YRR-------LFIKVPKTMTEKEIRQYFSS 420
T+ N K + Y SYD+ Y + +++ ++TE EIRQ F+S
Sbjct: 90 RRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEIRQGFAS 149
Query: 421 YGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
+G++ VR+ + +G+A+V F AKA Q
Sbjct: 150 FGRITEVRIFK------MQGYAFVKFDNKDAAAKAIVQ 181
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 62.5 bits (145), Expect = 6e-10
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH----- 264
S + LR F+ +G++ D + RD NT +++G ++ Y K A AIE+++
Sbjct: 40 SSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLG 99
Query: 265 MTTLLDNHKPIKVMVASDKNDYQSNSYDK-YRR-------LFIKVPKTMTEKEIRQYFSS 420
T+ N K + Y SYD+ Y + +++ ++TE EIRQ F+S
Sbjct: 100 RRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEIRQGFAS 159
Query: 421 YGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
+G++ VR+ + +G+A+V F AKA Q
Sbjct: 160 FGRITEVRIFK------MQGYAFVKFDNKDAAAKAIVQ 191
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 62.5 bits (145), Expect = 6e-10
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH----- 264
S + LR F+ +G++ D + RD NT +++G ++ Y K A AIE+++
Sbjct: 143 SSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLG 202
Query: 265 MTTLLDNHKPIKVMVASDKNDYQSNSYDK-YRR-------LFIKVPKTMTEKEIRQYFSS 420
T+ N K + Y SYD+ Y + +++ ++TE EIRQ F+S
Sbjct: 203 RRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEIRQGFAS 262
Query: 421 YGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
+G++ VR+ + +G+A+V F AKA Q
Sbjct: 263 FGRITEVRIFK------MQGYAFVKFDNKDAAAKAIVQ 294
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 62.5 bits (145), Expect = 6e-10
Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH----- 264
S + LR F+ +G++ D + RD NT +++G ++ Y K A AIE+++
Sbjct: 111 SSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLG 170
Query: 265 MTTLLDNHKPIKVMVASDKNDYQSNSYDK-YRR-------LFIKVPKTMTEKEIRQYFSS 420
T+ N K + Y SYD+ Y + +++ ++TE EIRQ F+S
Sbjct: 171 RRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEIRQGFAS 230
Query: 421 YGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
+G++ VR+ + +G+A+V F AKA Q
Sbjct: 231 FGRITEVRIFK------MQGYAFVKFDNKDAAAKAIVQ 262
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 61.7 bits (143), Expect = 1e-09
Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Frame = +1
Query: 103 KQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH-MTTLL 279
+ E DLR FE++G+I + + +D+ TG +G A++ Y SA LH TL
Sbjct: 38 RNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLP 97
Query: 280 DNHKPIKVMVASDKNDYQSNSYDKY--RRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQ 450
++ ++V A D + ++ DK ++LFI + K +E E+R F+++G+++ V +
Sbjct: 98 GMNRAMQVKPA-DTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVL 156
Query: 451 RDKLTDESKGFAYVNF 498
R SKG A+V +
Sbjct: 157 RG-ADGASKGCAFVKY 171
Score = 44.4 bits (100), Expect = 2e-04
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Frame = +1
Query: 64 DKPPYSRIFI-VCSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSA 240
DK ++FI + SKQ E ++R F +GE++++ + R + G ++G A++KY A
Sbjct: 119 DKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGAD-GASKGCAFVKYKHGLDA 177
Query: 241 ATAIEELHMTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFIKVPKTMTEKEIRQYFSS 420
AI LH + + V+ +D + N + + + M ++ +++
Sbjct: 178 HMAISALHGSQTMPGASSSLVVKYADTEKERQNRRMQQMAAQMGMLNPMLVNQVGMQYNA 237
Query: 421 YGKVESVRLQRDKLTDESKGFA 486
Y +V LQ+ L ++ A
Sbjct: 238 YQQV----LQQQSLAAQTNAMA 255
Score = 41.5 bits (93), Expect = 0.001
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +1
Query: 310 ASDKNDYQSNSYDKYRRLFIKVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAY 489
++D N + D + ++P+ + EK++R F +GK+ + +DK T KG A+
Sbjct: 15 STDSNGFPVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAF 74
Query: 490 VNF 498
+ +
Sbjct: 75 LTY 77
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 61.7 bits (143), Expect = 1e-09
Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Frame = +1
Query: 103 KQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH-MTTLL 279
+ E DLR FE++G+I + + +D+ TG +G A++ Y SA LH TL
Sbjct: 38 RNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLP 97
Query: 280 DNHKPIKVMVASDKNDYQSNSYDKY--RRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQ 450
++ ++V A D + ++ DK ++LFI + K +E E+R F+++G+++ V +
Sbjct: 98 GMNRAMQVKPA-DTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVL 156
Query: 451 RDKLTDESKGFAYVNF 498
R SKG A+V +
Sbjct: 157 RG-ADGASKGCAFVKY 171
Score = 44.4 bits (100), Expect = 2e-04
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Frame = +1
Query: 64 DKPPYSRIFI-VCSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSA 240
DK ++FI + SKQ E ++R F +GE++++ + R + G ++G A++KY A
Sbjct: 119 DKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGAD-GASKGCAFVKYKHGLDA 177
Query: 241 ATAIEELHMTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFIKVPKTMTEKEIRQYFSS 420
AI LH + + V+ +D + N + + + M ++ +++
Sbjct: 178 HMAISALHGSQTMPGASSSLVVKYADTEKERQNRRMQQMAAQMGMLNPMLVNQVGMQYNA 237
Query: 421 YGKVESVRLQRDKLTDESKGFA 486
Y +V LQ+ L ++ A
Sbjct: 238 YQQV----LQQQSLAAQTNAMA 255
Score = 41.5 bits (93), Expect = 0.001
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +1
Query: 310 ASDKNDYQSNSYDKYRRLFIKVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAY 489
++D N + D + ++P+ + EK++R F +GK+ + +DK T KG A+
Sbjct: 15 STDSNGFPVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAF 74
Query: 490 VNF 498
+ +
Sbjct: 75 LTY 77
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 61.7 bits (143), Expect = 1e-09
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 2/166 (1%)
Frame = +1
Query: 58 NDDKPPYSRIFIV-CSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTS 234
N+DK +IF+ S + DL F +YGE+ + DR G +RG A++++
Sbjct: 26 NEDK----KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGE 81
Query: 235 SAATAIEELHMTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQY 411
A+ T K ++V A + + +++F+ +P +E+++R +
Sbjct: 82 GCKLALAAREQTI---KGKSVEVKPAKSREN---------KKVFVGGLPSDYSEQDLRSH 129
Query: 412 FSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTY 549
F +GKV+ + DK T + FA++ F KA Q +T+
Sbjct: 130 FEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTF 175
Score = 40.3 bits (90), Expect = 0.003
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 319 KNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVN 495
K + S ++ +++F+ + + +++ +F+ YG+V +++ D+ S+GFA+V
Sbjct: 17 KENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVE 76
Query: 496 FTTFSETAKAFEQCDKTYK 552
FTT A ++T K
Sbjct: 77 FTTGEGCKLALAAREQTIK 95
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 61.7 bits (143), Expect = 1e-09
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 2/166 (1%)
Frame = +1
Query: 58 NDDKPPYSRIFIV-CSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTS 234
N+DK +IF+ S + DL F +YGE+ + DR G +RG A++++
Sbjct: 26 NEDK----KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGE 81
Query: 235 SAATAIEELHMTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQY 411
A+ T K ++V A + + +++F+ +P +E+++R +
Sbjct: 82 GCKLALAAREQTI---KGKSVEVKPAKSREN---------KKVFVGGLPSDYSEQDLRSH 129
Query: 412 FSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTY 549
F +GKV+ + DK T + FA++ F KA Q +T+
Sbjct: 130 FEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTF 175
Score = 40.3 bits (90), Expect = 0.003
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 319 KNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVN 495
K + S ++ +++F+ + + +++ +F+ YG+V +++ D+ S+GFA+V
Sbjct: 17 KENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVE 76
Query: 496 FTTFSETAKAFEQCDKTYK 552
FTT A ++T K
Sbjct: 77 FTTGEGCKLALAAREQTIK 95
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 58.4 bits (135), Expect = 1e-08
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Frame = +1
Query: 103 KQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLD 282
+Q+ E D R FEKYG + + RD++T ++G ++ + A A LH +++
Sbjct: 64 RQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIE 123
Query: 283 N-HKPIKVMVASDKNDYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRD 456
H P+++ A +N + R+LFI ++ K E+ +R+ F+ +G +E + RD
Sbjct: 124 GMHHPVQMKPADTENRNE-------RKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Query: 457 K 459
+
Sbjct: 177 Q 177
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 358 RLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
++F+ ++P+ E + R+ F YG V S + RDK T SKG +V F
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Score = 35.1 bits (77), Expect = 0.11
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGI 207
SK++ E +LR F K+G IED + RD++ G++RG+
Sbjct: 150 SKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGM 184
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 56.8 bits (131), Expect = 3e-08
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Frame = +1
Query: 148 GEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKVMVASDKND 327
G + + +P+DR T +G ++++ A AI+ L+M L KPIKV AS
Sbjct: 37 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYG--KPIKVNKASA--- 91
Query: 328 YQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESV-RLQRDKLTDESKGFAYVNFT 501
+ D +F+ + + EK + FS++G + V ++ RD + SKGFA++NF
Sbjct: 92 -HEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFA 150
Query: 502 TFSETAKAFE 531
+F + A E
Sbjct: 151 SFEASDTALE 160
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 56.8 bits (131), Expect = 3e-08
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Frame = +1
Query: 148 GEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKVMVASDKND 327
G + + +P+DR T +G ++++ A AI+ L+M L KPIKV AS
Sbjct: 47 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYG--KPIKVNKASA--- 101
Query: 328 YQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSYGKVESV-RLQRDKLTDESKGFAYVNFT 501
+ D +F+ + + EK + FS++G + V ++ RD + SKGFA++NF
Sbjct: 102 -HEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFA 160
Query: 502 TFSETAKAFE 531
+F + A E
Sbjct: 161 SFEASDTALE 170
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 53.6 bits (123), Expect = 3e-07
Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Frame = +1
Query: 76 YSRIFIVCSKQYREHD-LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAI 252
Y+ +F+ ++ + + L F K+GEI + D G+ +G ++ +A +A A+
Sbjct: 237 YTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAV 295
Query: 253 EELHMTTLLDNHKPIKVMVASDKND--------YQSNSYDKYRR-----LFIK-VPKTMT 390
E+L+ + L + V A K++ Y++ ++ +R L++K + + +
Sbjct: 296 EKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLN 355
Query: 391 EKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFATP 570
+ +R +FSS+G + S ++ D+ SKGF +V F E A D K I A P
Sbjct: 356 DDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAV--TDMNSKMIGAKP 412
Score = 33.9 bits (74), Expect = 0.25
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 385 MTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFE 531
++E + + FS G V S+R+ RD + S G+AYVNF ++ +A +
Sbjct: 68 VSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 53.6 bits (123), Expect = 3e-07
Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Frame = +1
Query: 76 YSRIFIVCSKQYREHD-LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAI 252
Y+ +F+ ++ + + L F K+GEI + D G+ +G ++ +A +A A+
Sbjct: 237 YTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAV 295
Query: 253 EELHMTTLLDNHKPIKVMVASDKND--------YQSNSYDKYRR-----LFIK-VPKTMT 390
E+L+ + L + V A K++ Y++ ++ +R L++K + + +
Sbjct: 296 EKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLN 355
Query: 391 EKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFATP 570
+ +R +FSS+G + S ++ D+ SKGF +V F E A D K I A P
Sbjct: 356 DDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAV--TDMNSKMIGAKP 412
Score = 33.9 bits (74), Expect = 0.25
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 385 MTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFE 531
++E + + FS G V S+R+ RD + S G+AYVNF ++ +A +
Sbjct: 68 VSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 53.6 bits (123), Expect = 3e-07
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Frame = +1
Query: 61 DDKPPYSRIFIVCSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSA 240
+++ + + + ++ R DL FF G + D+ + D TG ++GI Y+++ S
Sbjct: 20 EERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 79
Query: 241 ATAI----EELH------MTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFIKVPKTMT 390
+ + L T + ++ VAS + L + +
Sbjct: 80 PLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTHVLVENLHPKID 139
Query: 391 EKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
EK IR F S+G++E + L+ D E++GFA + F + K+ EQ
Sbjct: 140 EKMIRDIFESFGRIEKIDLEVDS-NRENRGFATITFRNADDAQKSCEQ 186
Score = 38.7 bits (86), Expect = 0.009
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 319 KNDYQSNSYDKYRRLFIKVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
K + + D+ L +++ + +++ ++FS+ G V VR+ D T SKG YV F
Sbjct: 14 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 73
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 53.6 bits (123), Expect = 3e-07
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Frame = +1
Query: 61 DDKPPYSRIFIVCSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSA 240
+++ + + + ++ R DL FF G + D+ + D TG ++GI Y+++ S
Sbjct: 165 EERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 224
Query: 241 ATAI----EELH------MTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFIKVPKTMT 390
+ + L T + ++ VAS + L + +
Sbjct: 225 PLGLALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTHVLVENLHPKID 284
Query: 391 EKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
EK IR F S+G++E + L+ D E++GFA + F + K+ EQ
Sbjct: 285 EKMIRDIFESFGRIEKIDLEVDS-NRENRGFATITFRNADDAQKSCEQ 331
Score = 38.7 bits (86), Expect = 0.009
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +1
Query: 319 KNDYQSNSYDKYRRLFIKVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
K + + D+ L +++ + +++ ++FS+ G V VR+ D T SKG YV F
Sbjct: 159 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 218
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 51.6 bits (118), Expect = 1e-06
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Frame = +1
Query: 211 YIKYAKTSSAATAIEELHMTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFI-KVPKTM 387
Y+K+ S A++ + T LD+H ++ DK + + K +F+ +P +
Sbjct: 205 YVKFGAEESVEKALK--YNGTKLDDH-----VIRVDKVGSKKKEFGKDMAIFVGNLPFEI 257
Query: 388 TEKEIRQYFSSY-GKVESVRLQRDKLTDESKGFAYVNFTTFSETAKA 525
TE + +FS+ G VE+VR+ RDK T + KGFA+VNF S + A
Sbjct: 258 TEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLA 304
Score = 32.7 bits (71), Expect = 0.57
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +1
Query: 133 FFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAI 252
F + G +E + + RD++TG+ +G A++ + + SS + A+
Sbjct: 266 FSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL 305
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 48.8 bits (111), Expect = 8e-06
Identities = 24/70 (34%), Positives = 42/70 (60%)
Frame = +1
Query: 106 QYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDN 285
Q E +L FF G+I ++ + DR TG RG A+I++A+ SA A+E+++ N
Sbjct: 15 QTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEF--N 72
Query: 286 HKPIKVMVAS 315
+P++V +A+
Sbjct: 73 GRPLRVNLAN 82
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 376 PKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
P TE+E+ +FSS G++ +VR+ D+ T +GFA++ F +A EQ
Sbjct: 13 PFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 47.6 bits (108), Expect = 2e-05
Identities = 28/94 (29%), Positives = 43/94 (45%)
Frame = +1
Query: 316 DKNDYQSNSYDKYRRLFIKVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVN 495
D N D+ +P+ M E E+R F G+V + + RDK+T KGFA+V
Sbjct: 164 DGRQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVT 223
Query: 496 FTTFSETAKAFEQCDKTYKAIFATPKDELKRPRN 597
F + + A+A + + + K E RP N
Sbjct: 224 FESRDDAARAIAELN-DIRMYHMVLKVEWTRPSN 256
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 46.8 bits (106), Expect = 3e-05
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Frame = +1
Query: 115 EHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKP 294
E L P FEK G+I D+ L D +G +RG A++ Y AA A + + + KP
Sbjct: 213 EDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAA-AKTYDGHEISTGKP 271
Query: 295 IKVMVASDKNDYQSNSYDKYRRLFI-KVPKTMTEKEIRQYFSSY--GKVESVRLQ-RDKL 462
+KV V+ +N+ RLFI +PKT ++ EI + ++ G V+ + D
Sbjct: 272 LKVNVSI------ANT-----RLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVPDNE 320
Query: 463 TDESKGFAYVNF 498
+++GF +V+F
Sbjct: 321 KIKNRGFCFVDF 332
Score = 33.5 bits (73), Expect = 0.33
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 373 VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCD 540
+P + E + F GK+ +RL D ++ S+G+A+V + + A A + D
Sbjct: 207 IPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYD 262
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 45.6 bits (103), Expect = 8e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +1
Query: 373 VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
VP TE+EI YF++ G V +VR+ D+ T +GFA+V F+ + +A EQ
Sbjct: 13 VPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 44.8 bits (101), Expect = 1e-04
Identities = 17/52 (32%), Positives = 35/52 (67%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIE 255
S Q +DLR FE+YG+I D+++PRD+ + +++G ++++ + A A++
Sbjct: 27 SYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Score = 40.3 bits (90), Expect = 0.003
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 388 TEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCD 540
T ++R+ F YG + V + RDK + +SKGF +V F + A ++ D
Sbjct: 31 TPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD 81
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 44.8 bits (101), Expect = 1e-04
Identities = 17/52 (32%), Positives = 35/52 (67%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIE 255
S Q +DLR FE+YG+I D+++PRD+ + +++G ++++ + A A++
Sbjct: 27 SYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Score = 40.3 bits (90), Expect = 0.003
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 388 TEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCD 540
T ++R+ F YG + V + RDK + +SKGF +V F + A ++ D
Sbjct: 31 TPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD 81
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 44.4 bits (100), Expect = 2e-04
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Frame = +1
Query: 286 HKPIKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKL 462
H+ ++ YQ +S + R+LFI + T++++ YFS +G V + RD
Sbjct: 47 HQMLRQFQQMGMGQYQHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPN 106
Query: 463 TDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFATPKDELKRPRNSLEGL 612
T S+GF +V F + A D+ +K T + PR + +
Sbjct: 107 TKHSRGFGFVTFASIFSAESAMN--DRPHKLGGKTVDSKRAIPREQMSSM 154
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 388 TEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKT 546
TE ++ FS YGK++++ L D+ T KG+A V + T E +A +Q + T
Sbjct: 67 TEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDT 119
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 43.6 bits (98), Expect = 3e-04
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Frame = +1
Query: 259 LHMTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVE 435
L + L D K + M YQ +S + R+LFI + T++++ YFS +G V
Sbjct: 20 LELPYLWDTFKQFQQM---GMGQYQHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVV 76
Query: 436 SVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFATPKDELKRPRNSLEGL 612
+ RD T S+GF +V F + A D+ +K T + PR + +
Sbjct: 77 DAIVIRDPNTKHSRGFGFVTFASIFSAESAMN--DRPHKLGGKTVDSKRAIPREQMSSM 133
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 43.2 bits (97), Expect = 4e-04
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +1
Query: 358 RLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
RL +K +P T TE+++R++F YG++ L+ K + +GFA+V F + A +
Sbjct: 4 RLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTK-EGKFRGFAFVGFLDEGSASNALAK 62
Query: 535 CDKTY 549
++T+
Sbjct: 63 SNQTF 67
Score = 43.2 bits (97), Expect = 4e-04
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +1
Query: 115 EHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKP 294
E LR FFEKYG+I D L + G+ RG A++ + SA+ A+ + + T N K
Sbjct: 16 EQQLRKFFEKYGQISDASLKYTKE-GKFRGFAFVGFLDEGSASNALAKSNQTFF--NSKK 72
Query: 295 IKVMVASDKND-YQSNSYDKYRRLFIKVPKTMTEKE 399
+ V D + ++ KY + +T EKE
Sbjct: 73 LTVEECRPFGDANKPRAWSKYAKDSSAYKRTHGEKE 108
Score = 39.5 bits (88), Expect = 0.005
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 358 RLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKA 525
RLF++ +P E +++ F YG+V V++ DK T KGFA V F F E A A
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEF-VFPEAAVA 335
Score = 39.5 bits (88), Expect = 0.005
Identities = 26/139 (18%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Frame = +1
Query: 142 KYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEEL-------HMTTLLDNHKPIK 300
K +I P + + G ++++ A TA++++ H L +H+
Sbjct: 670 KSAQISKKLNPAEPTKPLSMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKISHRENA 729
Query: 301 VMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRL-QRDKLTDES 474
A + + + + +L ++ +P + KE+ F ++G V+++R+ ++ +
Sbjct: 730 DKGALKRKEVKQKEQGECTKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQH 789
Query: 475 KGFAYVNFTTFSETAKAFE 531
+GF +V+F + E +AF+
Sbjct: 790 RGFGFVDFISADEAHRAFD 808
Score = 38.7 bits (86), Expect = 0.009
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 112 REHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEEL 261
+E DL+ F+KYGE+ ++ + D+ TG +G A +++ +A A L
Sbjct: 291 KEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 43.2 bits (97), Expect = 4e-04
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 328 YQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTT 504
YQ +S + R+LFI + T++++ YFS +G V + RD T S+GF +V F +
Sbjct: 60 YQHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFAS 119
Query: 505 FSETAKAFEQCDKTYKAIFATPKDELKRPRNSLEGL 612
A D+ +K T + PR + +
Sbjct: 120 IFSAESAMN--DRPHKLGGKTVDSKRAIPREQMSSM 153
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 42.7 bits (96), Expect = 5e-04
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +1
Query: 376 PKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
P TE ++ YFS G V +VR+ D+ T +GFA+V FT + +A +Q
Sbjct: 12 PFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 42.7 bits (96), Expect = 5e-04
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 58 NDDKPPYSRIFIV-----CSKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKY 222
N KP SR F V CS + LR F K+GE+ + + RD NT + +G ++ Y
Sbjct: 122 NRSKPETSRHFHVFVGDLCS-EIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSY 180
Query: 223 AKTSSAATAIEELH 264
+ A AI+E++
Sbjct: 181 PRREDAERAIDEMN 194
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 40.7 bits (91), Expect = 0.002
Identities = 24/59 (40%), Positives = 30/59 (50%)
Frame = +1
Query: 115 EHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHK 291
E DLR F ++GEI L DR +G +RG +I Y ATA + T LD HK
Sbjct: 89 EKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFI-YFNLIEDATAARDKLCNTDLDGHK 146
Score = 35.1 bits (77), Expect = 0.11
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 388 TEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKT 546
TEK++R F +G++ L D+ + S+GF ++ F + A ++ T
Sbjct: 88 TEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCNT 140
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/84 (25%), Positives = 45/84 (53%)
Frame = +1
Query: 115 EHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKP 294
E D+ F +YGE+ ++ L RD++TG+++G A++ Y S A++ + +L
Sbjct: 51 EGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIR 110
Query: 295 IKVMVASDKNDYQSNSYDKYRRLF 366
+ + Y+ ++ D+ +RL+
Sbjct: 111 VDHVEEYKVPKYKEDADDETKRLW 134
Score = 38.7 bits (86), Expect = 0.009
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 283 NHKPIKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDK 459
N + + + A D +Y ++I + ++E ++ FS YG+V ++ L RDK
Sbjct: 14 NERELSLGYAGDLKKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDK 73
Query: 460 LTDESKGFAYVNFTTFSETAKAFE 531
T +SKGFA++ + T A +
Sbjct: 74 DTGKSKGFAFLCYKDQRSTILAVD 97
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 388 TEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFT 501
T +EI Q+F G V V +Q D+ + KGFAYV FT
Sbjct: 90 TAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFT 127
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 39.9 bits (89), Expect = 0.004
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +1
Query: 370 KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
++P EKE+ YF +G V +R+ R++ T KG+AYV F
Sbjct: 38 RIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGF 80
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 39.1 bits (87), Expect = 0.007
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +1
Query: 355 RRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSET--AKA 525
R LF+ +P + E+EIR F +GKVE V ++ TD + +A+V F T + AKA
Sbjct: 169 RTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAA--YAFVMFQTVDQAIQAKA 226
Query: 526 FEQCDKTYKA 555
EQ D+ +A
Sbjct: 227 EEQ-DRPIRA 235
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 39.1 bits (87), Expect = 0.007
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +1
Query: 355 RRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSET--AKA 525
R LF+ +P + E+EIR F +GKVE V ++ TD + +A+V F T + AKA
Sbjct: 169 RTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAA--YAFVMFQTVDQAIQAKA 226
Query: 526 FEQCDKTYKA 555
EQ D+ +A
Sbjct: 227 EEQ-DRPIRA 235
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 39.1 bits (87), Expect = 0.007
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +1
Query: 355 RRLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSET--AKA 525
R LF+ +P + E+EIR F +GKVE V ++ TD + +A+V F T + AKA
Sbjct: 146 RTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAA--YAFVMFQTVDQAIQAKA 203
Query: 526 FEQCDKTYKA 555
EQ D+ +A
Sbjct: 204 EEQ-DRPIRA 212
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 37.1 bits (82), Expect = 0.027
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 76 YSRIFIVCSKQYREHD--LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATA 249
+++IF V Y D L +FE++G+IE+ + DRNT ++RG ++ +SA A
Sbjct: 34 FTKIF-VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERA 92
Query: 250 IEE 258
++
Sbjct: 93 CKD 95
Score = 34.7 bits (76), Expect = 0.14
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 352 YRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAF 528
+ ++F+ +P ++K + +YF +G +E + D+ T +S+G+ +V T + A A
Sbjct: 34 FTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFV---TMKDRASAE 90
Query: 529 EQC 537
C
Sbjct: 91 RAC 93
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 36.3 bits (80), Expect = 0.047
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +1
Query: 385 MTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFA 564
+ E + + FS+ G V S+R+ RD T S G+AYVNF ++ +A + + ++A+
Sbjct: 43 VNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN--FEALHG 100
Query: 565 TP 570
P
Sbjct: 101 KP 102
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 36.3 bits (80), Expect = 0.047
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +1
Query: 385 MTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFA 564
+ E + + FS+ G V S+R+ RD T S G+AYVNF ++ +A + + ++A+
Sbjct: 43 VNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN--FEALHG 100
Query: 565 TP 570
P
Sbjct: 101 KP 102
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 36.3 bits (80), Expect = 0.047
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +1
Query: 385 MTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFA 564
+ E + + FS+ G V S+R+ RD T S G+AYVNF ++ +A + + ++A+
Sbjct: 43 VNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN--FEALHG 100
Query: 565 TP 570
P
Sbjct: 101 KP 102
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 35.9 bits (79), Expect = 0.062
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 361 LFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQC 537
LF+ K+ T++++ FS +GK+ + + RD+ + +S +A++ F +AF +
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 538 D 540
D
Sbjct: 303 D 303
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 35.9 bits (79), Expect = 0.062
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 361 LFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQC 537
LF+ K+ T++++ FS +GK+ + + RD+ + +S +A++ F +AF +
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 302
Query: 538 D 540
D
Sbjct: 303 D 303
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 35.9 bits (79), Expect = 0.062
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 361 LFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQC 537
LF+ K+ T++++ FS +GK+ + + RD+ + +S +A++ F +AF +
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKM 233
Query: 538 D 540
D
Sbjct: 234 D 234
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 35.9 bits (79), Expect = 0.062
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 388 TEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKA 525
T +EI ++F G++ + +DK T + K FAY+ F S A
Sbjct: 67 TIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENA 112
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 121 DLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAI 252
++ F+ G+I +P+D+ T + + AYI++ +SS A+
Sbjct: 70 EIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 113
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 35.9 bits (79), Expect = 0.062
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 388 TEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
T EI ++F+ GKV V + +DK T K FA+V F
Sbjct: 58 TVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEF 94
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 35.5 bits (78), Expect = 0.081
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 391 EKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
+ ++ YF YG ++SV + D T +GFA + F + KA EQ
Sbjct: 38 KSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQ 85
Score = 32.7 bits (71), Expect = 0.57
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 124 LRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEE 258
L +F++YG I+ + + D +TG RG A I + A AIE+
Sbjct: 41 LEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQ 85
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 34.3 bits (75), Expect = 0.19
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 388 TEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKA 525
T +E+ ++F G + + +DK T + K FAY+ F S A
Sbjct: 73 TIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENA 118
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.19
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 64 DKPPYSRIFIVC-SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSA 240
D Y R+++ E DL+ FE +GEI L R RG Y+++ +S
Sbjct: 202 DAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQ 261
Query: 241 ATAIEELHMTTL 276
+ AI ++M L
Sbjct: 262 SEAIAGMNMFDL 273
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 34.3 bits (75), Expect = 0.19
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 64 DKPPYSRIFIVC-SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSA 240
D Y R+++ E DL+ FE +GEI L R RG Y+++ +S
Sbjct: 202 DAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQ 261
Query: 241 ATAIEELHMTTL 276
+ AI ++M L
Sbjct: 262 SEAIAGMNMFDL 273
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 34.3 bits (75), Expect = 0.19
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 64 DKPPYSRIFIVC-SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSA 240
D Y R+++ E DL+ FE +GEI L R RG Y+++ +S
Sbjct: 202 DAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQ 261
Query: 241 ATAIEELHMTTL 276
+ AI ++M L
Sbjct: 262 SEAIAGMNMFDL 273
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 33.5 bits (73), Expect = 0.33
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 337 NSYDKYRRLFIK--VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFS 510
N+ L+I+ +P T + +R+ S YG + S + DK T+ KG+ +V+F +
Sbjct: 101 NTTPSSTNLYIRGLMPNT-NDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQ 159
Query: 511 ETAKAFE 531
A A +
Sbjct: 160 AAAAAVD 166
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 33.1 bits (72), Expect = 0.43
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 400 IRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFE 531
+R+ S YG + S + DK T+ KG+ +V+F + A A +
Sbjct: 97 LREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVD 140
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 32.7 bits (71), Expect = 0.57
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 385 MTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQC-DKTY 549
+TEK++ +F YG + +R+ LT+ KG A++ FTT +A E+ +KT+
Sbjct: 250 VTEKDLNDFFYQYGDIRCLRV----LTE--KGCAFIEFTTREAAERAAERSFNKTF 299
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 32.3 bits (70), Expect = 0.76
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 106 QYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH 264
++R+ DL+ FEK+G + D+ + N ++G ++ + A A +ELH
Sbjct: 163 RFRDPDLKTMFEKFGVVSDVEI--IFNERGSKGFGFVTMERPQDAERARQELH 213
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 32.3 bits (70), Expect = 0.76
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 106 QYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH 264
++R+ DL+ FEK+G + D+ + N ++G ++ + A A +ELH
Sbjct: 163 RFRDPDLKTMFEKFGVVSDVEI--IFNERGSKGFGFVTMERPQDAERARQELH 213
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 32.3 bits (70), Expect = 0.76
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Frame = +1
Query: 343 YDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETA 519
+++ R L++ + +TEK + F +G V ++ + D + + +GF +V F + A
Sbjct: 7 HNRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAA 66
Query: 520 KAFEQCD------KTYKAIFATPKDELKR 588
A + + KT + FA P +R
Sbjct: 67 MAIDNMNESELFGKTIRVNFARPPKATER 95
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 31.5 bits (68), Expect = 1.3
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 391 EKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFE 531
E+ I++ S +GK++ + + K + SKG A+V+F+T E + E
Sbjct: 276 EELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIE 322
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 31.5 bits (68), Expect = 1.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 64 DKPPYSRIFIVCSKQYREHDLRPFFEKYGEIEDM 165
D PP+ RI +C K YR D+R F E+++M
Sbjct: 3430 DDPPFDRILKICLK-YRPTDIRVFHRVLKELDEM 3462
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 31.5 bits (68), Expect = 1.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 64 DKPPYSRIFIVCSKQYREHDLRPFFEKYGEIEDM 165
D PP+ RI +C K YR D+R F E+++M
Sbjct: 3441 DDPPFDRILKICLK-YRPTDIRVFHRVLKELDEM 3473
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 31.5 bits (68), Expect = 1.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 64 DKPPYSRIFIVCSKQYREHDLRPFFEKYGEIEDM 165
D PP+ RI +C K YR D+R F E+++M
Sbjct: 3441 DDPPFDRILKICLK-YRPTDIRVFHRVLKELDEM 3473
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 31.5 bits (68), Expect = 1.3
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 283 NHKPIKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDK 459
N PI M S K + + R+++ +P + E+++ F +YG+V SV + +
Sbjct: 27 NKDPIFTMPISVKPKTREPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN- 85
Query: 460 LTDESKGFAYVNFTTFSETAKA 525
SKGF +V + KA
Sbjct: 86 -DRGSKGFGFVTLDSIESCEKA 106
>U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical
protein EEED8.10a protein.
Length = 738
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/86 (23%), Positives = 39/86 (45%)
Frame = +1
Query: 328 YQSNSYDKYRRLFIKVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTF 507
+Q S D + + + +T+ +++ +FS YGK+ S L R++ G +
Sbjct: 104 FQHTSRDDRKIVVSNISAKVTQSQLQSFFSQYGKITSCILPREEKKTSVFGTLPKHSRNC 163
Query: 508 SETAKAFEQCDKTYKAIFATPKDELK 585
F++ + +A A P +ELK
Sbjct: 164 GTATITFKKSEHADRAKNANP-EELK 188
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 31.5 bits (68), Expect = 1.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 64 DKPPYSRIFIVCSKQYREHDLRPFFEKYGEIEDM 165
D PP+ RI +C K YR D+R F E+++M
Sbjct: 3441 DDPPFDRILKICLK-YRPTDIRVFHRVLKELDEM 3473
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 31.5 bits (68), Expect = 1.3
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 283 NHKPIKVMVASDKNDYQSNSYDKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDK 459
N PI M S K + + R+++ +P + E+++ F +YG+V SV + +
Sbjct: 27 NKDPIFTMPISVKPKTREPASFTDNRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN- 85
Query: 460 LTDESKGFAYVNFTTFSETAKA 525
SKGF +V + KA
Sbjct: 86 -DRGSKGFGFVTLDSIESCEKA 106
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 100 SKQYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLL 279
S+Q + DLR F YG+I ++ + +T+ A+++Y K A AI E++ +
Sbjct: 245 SQQTTDADLRDLFSTYGDIAEVRI------FKTQRYAFVRYEKKECATKAIMEMNGKEMA 298
Query: 280 DN 285
N
Sbjct: 299 GN 300
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.9 bits (64), Expect = 4.0
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 346 DKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
D ++FI +P +TE ++++ S+G +++ L D SKG+A+ +
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEY 338
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 4.0
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 346 DKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
D ++FI +P +TE ++++ S+G +++ L D SKG+A+ +
Sbjct: 288 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEY 338
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.9 bits (64), Expect = 4.0
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 346 DKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
D ++FI +P +TE ++++ S+G +++ L D SKG+A+ +
Sbjct: 263 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEY 313
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.9 bits (64), Expect = 4.0
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 346 DKYRRLFIK-VPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNF 498
D ++FI +P +TE ++++ S+G +++ L D SKG+A+ +
Sbjct: 266 DSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEY 316
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 160 DMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELH 264
D++L DR++G +G AY+ + TAI L+
Sbjct: 40 DIHLVHDRDSGSFKGFAYVTFENEQQMNTAISGLN 74
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 358 RLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
RL++ K+P E+++ ++ YGK+ ++ ++ GFA+V+F + A
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMK--------YGFAFVDFEDSRDAEDACHD 54
Query: 535 CD 540
D
Sbjct: 55 LD 56
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 358 RLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
RL++ K+P E+++ ++ YGK+ ++ ++ GFA+V+F + A
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMK--------YGFAFVDFEDSRDAEDACHD 54
Query: 535 CD 540
D
Sbjct: 55 LD 56
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 358 RLFI-KVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQ 534
RL++ K+P E+++ ++ YGK+ ++ ++ GFA+V+F + A
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMK--------YGFAFVDFEDSRDAEDACHD 54
Query: 535 CD 540
D
Sbjct: 55 LD 56
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 28.7 bits (61), Expect = 9.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 106 QYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTL 276
+YRE DL FEK G + D+ + N ++G ++ A A E + TT+
Sbjct: 110 KYREPDLTAMFEKVGPVVDVEI--IFNERGSKGFGFVTMQNPDDADRARAEFNGTTI 164
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 28.7 bits (61), Expect = 9.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 178 DRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKVMVASDKND 327
DRNTGE +G I + S+A AI + P+ + +A + D
Sbjct: 241 DRNTGEPKGECMITFVDASAAQQAITMYNGQPFPGGSSPMSISLAKFRAD 290
>L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical
protein R05D3.8 protein.
Length = 187
Score = 28.7 bits (61), Expect = 9.3
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 310 ASDKNDYQSNSYDKYRRLFIKV-P-KTMTEKEIRQYFSSYGKVESVRLQRD 456
A D+ND + K RLF+ P +T KE++ F +YGK+ V D
Sbjct: 18 AKDENDKKLKVESK--RLFVSYFPLDRLTSKELKMNFGAYGKITDVEFVSD 66
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 28.7 bits (61), Expect = 9.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 106 QYREHDLRPFFEKYGEIEDMYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTL 276
+YRE DL FEK G + D+ + N ++G ++ A A E + TT+
Sbjct: 110 KYREPDLTAMFEKVGPVVDVEI--IFNERGSKGFGFVTMQNPDDADRARAEFNGTTI 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,491,080
Number of Sequences: 27780
Number of extensions: 525965
Number of successful extensions: 1578
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3568584636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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