Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_C13
         (1278 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   1.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    25   1.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   2.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   2.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   3.3  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +1

Query: 250 IEELHMTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFIKV 375
           I  L   T+ +N+        ++ N+Y +N+Y+ Y++L+  +
Sbjct: 315 ISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNI 356


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = +1

Query: 316 DKNDYQSNSYDKYRRLFIKV 375
           + N+Y +N+Y+ Y++L+  +
Sbjct: 92  NNNNYNNNNYNNYKKLYYNI 111


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 269 LPYLTITNPSKLWSP 313
           L YLT+T+ S++W P
Sbjct: 104 LKYLTLTDASRVWMP 118


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 269 LPYLTITNPSKLWSP 313
           L YLT+T+ S++W P
Sbjct: 104 LKYLTLTDASRVWMP 118


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 517 QFPKKL*NSHKQILYFRQSICLSVNAL 437
           Q P    N    +LY+R S+ LSV AL
Sbjct: 304 QLPHNSTNPPNILLYYRDSLALSVFAL 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,660
Number of Sequences: 438
Number of extensions: 6834
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43822995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)