Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C12
(1373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 30 3.7
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 30 4.9
05_01_0450 + 3577928-3579526,3579695-3579832 30 4.9
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 29 6.5
09_04_0623 - 19038777-19040561 29 8.6
06_03_0899 - 25776159-25776797,25776898-25777806,25779425-257795... 29 8.6
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 29 8.6
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 30.3 bits (65), Expect = 3.7
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 602 SRPPRREAGEGIHRHHQDDMGATMGHHRSVQFRDGGTILGGHASRPQRQDSQEEGS--PL 775
S PP R+A + H H + HH+ + R +L A+R + D +++G+ PL
Sbjct: 266 STPPERKA-DTHHSHRRGIRHKQQQHHQHPRRRKDTVLLAAAAARQEAPDRRDDGAAMPL 324
Query: 776 AALSV 790
A ++
Sbjct: 325 PAATI 329
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 29.9 bits (64), Expect = 4.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 507 RKMRTVHNILDVDKDGLISY 566
RK+R++HN LD ++ GL+ Y
Sbjct: 11 RKLRSLHNALDCERSGLVRY 30
>05_01_0450 + 3577928-3579526,3579695-3579832
Length = 578
Score = 29.9 bits (64), Expect = 4.9
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 531 ILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIK 653
+LD + DG +S ++F LF +R K L+ K E+ +I+K
Sbjct: 513 LLDANSDGSLSSDEFALFQKRVKLKTKLENKD-DEYKEILK 552
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 29.5 bits (63), Expect = 6.5
Identities = 26/110 (23%), Positives = 49/110 (44%)
Frame = +3
Query: 513 MRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIKMTWEQQWGTIDPY 692
++ + ++D D DG++SY + +F S HL + + + + G +D
Sbjct: 442 IKDMFKVMDTDNDGIVSYEELKSGIAKFGS--HLAESEVQMLIEAVDTNGR---GALDYG 496
Query: 693 NFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKAVDADRSGYISVREFK 842
F+ V +L+ M N + L++ +LF D D +GYI E +
Sbjct: 497 EFLAVSLHLQRM---ANGEHLRR------AFLF--FDKDGNGYIEPEELQ 535
>09_04_0623 - 19038777-19040561
Length = 594
Score = 29.1 bits (62), Expect = 8.6
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +2
Query: 560 LVQRLLAVR*KVQVSRPPRREAGEGIHRHHQDDMGATMGHHRSVQ-FRDGGTILGG--HA 730
LV L AVR + R A +H HH + A + F+D I+ H
Sbjct: 76 LVCHLRAVRGLGKADREGFYAAALWMHDHHPRTLAANLAAFAEFGCFKDLLEIVYRVLHG 135
Query: 731 SRPQRQDSQEEGSPLAALSVQGRRRRP 811
R + ++ +EEG S GRRRRP
Sbjct: 136 PRDEHKEEEEEGDDQTE-SEDGRRRRP 161
>06_03_0899 -
25776159-25776797,25776898-25777806,25779425-25779592,
25779703-25779890,25779993-25780137,25780566-25780775
Length = 752
Score = 29.1 bits (62), Expect = 8.6
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +3
Query: 507 RKMRTVHNILDVDKDGLISYNDFL--LFAERFKSLGHLDAKQAKEFTDIIKMTWEQ---- 668
RKMR H IL + GL+ N L F ++ L + K ++E + II T+E+
Sbjct: 177 RKMREEHKILKLMLGGLLEQNGVLKRAFLKQHNRLNDYEKKMSQERSQIID-TYEKEIKA 235
Query: 669 -QWGTIDPYNFVTVEQYL 719
Q+ T +EQYL
Sbjct: 236 LQFATTAKLKQRNMEQYL 253
>02_05_0232 +
27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 898 PAKATAACSLVSPRHSKNNLNSRTDMYPERSASTA 794
P+++ A+ S SPRH+ N + YP + + TA
Sbjct: 252 PSESEASSSSGSPRHNLNRSRTEVAKYPSQGSGTA 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,499,307
Number of Sequences: 37544
Number of extensions: 649471
Number of successful extensions: 1814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1812
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4341590196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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