Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C12
(1373 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80216-5|CAB02282.1| 190|Caenorhabditis elegans Hypothetical pr... 31 1.4
L33681-1|AAA85632.1| 190|Caenorhabditis elegans neuronal calciu... 31 1.4
Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical pr... 31 1.9
AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-li... 31 1.9
Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical pr... 31 2.5
U28740-5|AAA68320.1| 229|Caenorhabditis elegans Hypothetical pr... 30 3.3
Z70783-6|CAA94856.1| 195|Caenorhabditis elegans Hypothetical pr... 30 4.4
AF016435-6|AAB65882.1| 213|Caenorhabditis elegans Hypothetical ... 30 4.4
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 29 7.7
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 29 7.7
>Z80216-5|CAB02282.1| 190|Caenorhabditis elegans Hypothetical
protein F10G8.5 protein.
Length = 190
Score = 31.5 bits (68), Expect = 1.4
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +3
Query: 621 KQAKEFTDIIKMTWEQQWGTIDPYNFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKAV 800
K+ FT+ W + + P +T EQ+++ V D A + ++F+
Sbjct: 19 KKNTNFTEEQIKEWYKGFVQDCPKGHLTKEQFIK----VYKDFFPSGSAEGFCEHVFRTF 74
Query: 801 DADRSGYISVREFKLFFECL--GLTSEHAAVAFAGIDVNG 914
D D SG+I +EF L G + AF D++G
Sbjct: 75 DTDNSGFIDFKEFLLAINVTSSGTPEQKLEWAFRMYDIDG 114
>L33681-1|AAA85632.1| 190|Caenorhabditis elegans neuronal calcium
binding protein protein.
Length = 190
Score = 31.5 bits (68), Expect = 1.4
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +3
Query: 621 KQAKEFTDIIKMTWEQQWGTIDPYNFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKAV 800
K+ FT+ W + + P +T EQ+++ V D A + ++F+
Sbjct: 19 KKNTNFTEEQIKEWYKGFVQDCPKGHLTKEQFIK----VYKDFFPSGSAEGFCEHVFRTF 74
Query: 801 DADRSGYISVREFKLFFECL--GLTSEHAAVAFAGIDVNG 914
D D SG+I +EF L G + AF D++G
Sbjct: 75 DTDNSGFIDFKEFLLAINVTSSGTPEQKLEWAFRMYDIDG 114
>Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical
protein C18E9.1 protein.
Length = 171
Score = 31.1 bits (67), Expect = 1.9
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 2/147 (1%)
Frame = +3
Query: 480 GLDRSEFWRRKMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIKMT 659
GL+ E K + D D +G IS + +SLG +Q E D++
Sbjct: 28 GLNEEEIMEYK--AAFRLFDKDGNGSISSKEL---GVAMRSLGQNPTEQ--ELLDMVNEV 80
Query: 660 WEQQWGTIDPYNFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKAVDADRSGYISVREF 839
GTID F Q ++ M+ ND + ++A F+ D D +G+I+ EF
Sbjct: 81 DIDGSGTIDFGEFC---QMMKRMNKE-NDSEMIREA-------FRVFDRDGNGFITADEF 129
Query: 840 KLFFECLG--LTSEHAAVAFAGIDVNG 914
+ F +G + + A ID++G
Sbjct: 130 RYFMTHMGDQFSDQEVDEIIAEIDIDG 156
>AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-like
protein protein.
Length = 171
Score = 31.1 bits (67), Expect = 1.9
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 2/147 (1%)
Frame = +3
Query: 480 GLDRSEFWRRKMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIKMT 659
GL+ E K + D D +G IS + +SLG +Q E D++
Sbjct: 28 GLNEEEIMEYK--AAFRLFDKDGNGSISSKEL---GVAMRSLGQNPTEQ--ELLDMVNEV 80
Query: 660 WEQQWGTIDPYNFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKAVDADRSGYISVREF 839
GTID F Q ++ M+ ND + ++A F+ D D +G+I+ EF
Sbjct: 81 DIDGSGTIDFGEFC---QMMKRMNKE-NDSEMIREA-------FRVFDRDGNGFITADEF 129
Query: 840 KLFFECLG--LTSEHAAVAFAGIDVNG 914
+ F +G + + A ID++G
Sbjct: 130 RYFMTHMGDQFSDQEVDEIIAEIDIDG 156
>Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical
protein T07G12.1 protein.
Length = 182
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 747 KTLKKKAHRWLPYL-FKAVDADRSGYISVREFKLFFECLG--LTSEHAAVAFAGIDVNGA 917
K + K+ + L L FK D D +GYI+ +EFK F +G + E +D +G
Sbjct: 86 KEMNKETDQELIRLAFKVFDKDGNGYITAQEFKHFMTTMGERFSEEEVDEIIREVDKDGD 145
Query: 918 DE 923
++
Sbjct: 146 EQ 147
>U28740-5|AAA68320.1| 229|Caenorhabditis elegans Hypothetical
protein B0563.7 protein.
Length = 229
Score = 30.3 bits (65), Expect = 3.3
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Frame = +3
Query: 507 RKMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIKMTWEQQWGTID 686
++ R + N+ D D G I + + S+G L A +A E ++IK G ID
Sbjct: 51 KEYRQLFNMFDTDGSGAIGNEEL---KQAMISIG-LHANKA-EIDNVIKEVDADGNGEID 105
Query: 687 PYNFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKAVDADRSGYISVREFKLFFECLG- 863
F + +++ N++ +++ F+ D DR+G I+ EFK + G
Sbjct: 106 FEEFCACMKKSQNIVKSTNEELIRE--------CFEIFDQDRNGIITENEFKYIAKEFGD 157
Query: 864 LTSEHAAVAFAGIDVN 911
E A F +DV+
Sbjct: 158 FDDELAEKVFRELDVS 173
>Z70783-6|CAA94856.1| 195|Caenorhabditis elegans Hypothetical
protein ZK856.8 protein.
Length = 195
Score = 29.9 bits (64), Expect = 4.4
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = +3
Query: 483 LDRSEFWRRKM-RTVHNILDVDK--DGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIK 653
+ +EF R ++ R L +DK G +S +DFL E ++ L + F +
Sbjct: 18 MSETEFNRNQIVRLYSRFLSLDKKGQGFLSRDDFLNVPEL--AVNPLGDRIVDAFFTLAS 75
Query: 654 MTWEQQWGTIDPYNFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKAVDADRSGYISVR 833
+ + ++ FV + + + + V + +K L + FK D +++ YI+
Sbjct: 76 SNGDNEEQQLNFRQFVRILAHFQPISRVKKNALNSRKDK--LLFAFKMYDLNKNDYITRE 133
Query: 834 EFKLFFECL 860
EFK+ +
Sbjct: 134 EFKVILNSM 142
>AF016435-6|AAB65882.1| 213|Caenorhabditis elegans Hypothetical
protein F59D6.7 protein.
Length = 213
Score = 29.9 bits (64), Expect = 4.4
Identities = 25/109 (22%), Positives = 48/109 (44%)
Frame = +3
Query: 534 LDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIKMTWEQQWGTIDPYNFVTVEQ 713
LD + G +S +DFL E ++ L + F + + + G + FV +
Sbjct: 56 LDKNGQGYLSRDDFLNVPEL--AVNPLGDRIIDAFFTLGDSDGDSKSGQLTFRQFVRILA 113
Query: 714 YLEDMHHVLNDKTLKKKAHRWLPYLFKAVDADRSGYISVREFKLFFECL 860
+ + + V D L + + L + FK D +++ YI+ EFK+ +
Sbjct: 114 HFQPISKV-KDNALNSRKDK-LRFAFKMYDLNKNNYITREEFKVILNSM 160
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 666 QQWGTIDPYNFVTVEQYLEDMHHVLNDKTLKKKAHRWLPYLFKAVDADRSGYISVREFKL 845
Q W +D + ++ LE N + ++A R +FK D +++G + ++FK
Sbjct: 2246 QAWDQLDQLA-MRMQHNLEQQIQARNQSGVSEEALREFSMMFKHFDKEKTGRLDHQQFKS 2304
Query: 846 FFECLG 863
LG
Sbjct: 2305 CLRALG 2310
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
pick c disease)related protein 2 protein.
Length = 1274
Score = 29.1 bits (62), Expect = 7.7
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +3
Query: 630 KEFTDIIKMTWEQQWGTIDPYNFVTVE-QYLEDMHHVLNDKTLKKKAHRWLPYLFKAVDA 806
K+F D T + + T E ++ ++HH L + AH + A++
Sbjct: 952 KQFCDPSNATHCSSCSSSSVASLTTTEYEFYRNLHHFLETPPSIQCAHGGMALAKPAINL 1011
Query: 807 DRSGYISVREFKLFFECLGLT 869
R+G I F FF+ L L+
Sbjct: 1012 TRNGKIQSAYFSTFFKKLNLS 1032
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,074,139
Number of Sequences: 27780
Number of extensions: 527769
Number of successful extensions: 1390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3881690894
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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