Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_C12
         (1373 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   6.2  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 660 WEQQWGTIDPYNFVTVEQYLEDMHHVLNDKTLKKKAHR 773
           + Q W ++ PY  ++VE    + H   +D+ ++++A R
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE-HPFWDDQRVEQEAKR 187


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 565 YEISPSLSTSKMLWTVRILRRQN 497
           + I  S++TSKM+ + R+  RQN
Sbjct: 266 FTIQSSVTTSKMMVSPRLYDRQN 288


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 949 PLTIRWXVCSSAPLTSMPAKATAACSLVSPRHSKNNLNSRTDMYPERS 806
           PLTI W     +P    P  A+A  S + P  S   L S T++  E S
Sbjct: 640 PLTISWLKDGQSPFPLPPNLASANISQLDPYSS---LLSITNLAAEHS 684


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 922 SSAPLTSMPAKATAACSLVSPRHSKNNLNSR-TDMYPERSAS 800
           ++ P+TS+PA +T+  S+   +   N++ ++ T   P + A+
Sbjct: 852 TTVPITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKAT 893


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,522
Number of Sequences: 438
Number of extensions: 6384
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 47665011
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)