Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_C11
         (1237 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-10|AAL00882.1|   69|Caenorhabditis elegans Cu (copper) ch...    56   5e-08
AB017201-1|BAA37144.1|   69|Caenorhabditis elegans copper chaper...    56   5e-08
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    29   9.0  

>L14429-10|AAL00882.1|   69|Caenorhabditis elegans Cu (copper)
           chaperonin protein 1 protein.
          Length = 69

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 24/63 (38%), Positives = 41/63 (65%)
 Frame = +1

Query: 337 TTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKT 516
           T ++F + MTC GC+ A  +VL +L    ++   I++  +K++V + L A D+LE +KKT
Sbjct: 2   TQYVFEMGMTCNGCANAARKVLGKLGEDKIKIDDINVETKKITVTTDLPASDVLEALKKT 61

Query: 517 GKK 525
           GK+
Sbjct: 62  GKE 64


>AB017201-1|BAA37144.1|   69|Caenorhabditis elegans copper chaperone
           protein.
          Length = 69

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 24/63 (38%), Positives = 41/63 (65%)
 Frame = +1

Query: 337 TTHIFNVEMTCEGCSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKT 516
           T ++F + MTC GC+ A  +VL +L    ++   I++  +K++V + L A D+LE +KKT
Sbjct: 2   TQYVFEMGMTCNGCANAARKVLGKLGEDKIKIDDINVETKKITVTTDLPASDVLEALKKT 61

Query: 517 GKK 525
           GK+
Sbjct: 62  GKE 64


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 510 ENWQEN-HICWCSVELAGWFLIPQNLWLFWMLKIIM 614
           E WQ+   ICW SV+ A WF      W F  +++I+
Sbjct: 237 ETWQKTTEICWNSVKCALWFGFRLVFW-FGFIELIL 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,592,580
Number of Sequences: 27780
Number of extensions: 452258
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3422502224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)