Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_C10
         (1359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    30   0.64 
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    28   3.4  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    27   6.0  

>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
 Frame = +1

Query: 649 VQHGARFKRKLQRRLTRQALAEAKAIKEQIHVLVYVAELVAKDP---VLAWKKAKELYAS 819
           +  G+R          +    E K   +Q+  +  +AE +   P    LAW   K  Y S
Sbjct: 238 IPEGSRLSTTFTSLAGQLQTPEGKTQLDQVRQISKIAEQIGATPSQLALAWT-LKNPYVS 296

Query: 820 ---LSQPEPENQARPVTLEELMVLLTRETARKVVHLVNYTHTDL 942
              L   +PE     V   E +  LT E  +K+  ++N+T  ++
Sbjct: 297 TTILGASKPEQIVENVKAVEFIDKLTPEILKKIDEILNFTPLEI 340


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 307 LETPIVQLDKFLCKSLDV-VEKSMPSIYMPPEEMYSETRQYVLRRADSV 450
           +E  I  +DK +   ++  + +S+P++  PP + +SET  Y     DS+
Sbjct: 208 IEKKISNVDKPISDLIENDIHESLPALQNPPIQSHSETDLYADEELDSI 256


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 589 WSRQLRLGCLAGGTCR-RICQRL*AHGRERSRWPPSSANPRQLCLVASL 446
           W R   LG L+ G     +C  +     ER   PPS +NP  +  V SL
Sbjct: 73  WQRAEILGALSNGVFLIALCMFIFMEAIERFIEPPSVSNPTLMFFVGSL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,529,620
Number of Sequences: 5004
Number of extensions: 90530
Number of successful extensions: 234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 749166106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)