Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C10
(1359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1130 - 34319558-34319603,34320236-34320335,34320498-343205... 34 0.30
05_02_0094 + 6562212-6563399 32 1.2
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 31 2.1
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557... 31 2.1
08_02_0885 + 22268287-22268988 30 3.7
02_01_0319 - 2148788-2148892,2149474-2149557,2149643-2149723,215... 30 3.7
06_01_0768 + 5742938-5743196,5743291-5744729 30 4.9
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 29 8.5
10_08_0207 - 15822080-15822190,15822886-15822945,15823021-158231... 29 8.5
03_01_0263 + 2038139-2038445,2038610-2038618,2038759-2039126,203... 29 8.5
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 8.5
>02_05_1130 -
34319558-34319603,34320236-34320335,34320498-34320577,
34320680-34320840,34321602-34321731,34322055-34322230,
34322873-34323068,34323768-34323889,34324376-34324468,
34324672-34324740,34325259-34325423,34325771-34326061
Length = 542
Score = 33.9 bits (74), Expect = 0.30
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -3
Query: 490 PSSANPRQLCLVASLNPHGGARIDASLSTSPLEAYKLKAYSSRPHPATCRGTCPVV 323
PS+ +P A+ +P GG A+ S PL A + RP P RG C VV
Sbjct: 12 PSNPSPSSRSAAAAFSPRGGVHFAAARSGLPL-ACAAPRHRGRPPPRRRRGGCLVV 66
>05_02_0094 + 6562212-6563399
Length = 395
Score = 31.9 bits (69), Expect = 1.2
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -3
Query: 490 PSSANPRQLCLVASLNPHGGARIDASLSTSPLEAYKLKAYSSRPHPATCRGTCPVVRSEF 311
PSS PR+ L ++ +G AR+ P A + A+ + P P T R ++ +
Sbjct: 9 PSSLRPREPLLCRVISAYGRARL-------PAAARRAFAHPAFPAPRTARALNTLLHALL 61
Query: 310 PGVEP-PGVLAECRSLGTSHP 251
P P +L+ECR G HP
Sbjct: 62 ACRAPLPELLSECRGSGI-HP 81
>12_01_0222 -
1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 31.1 bits (67), Expect = 2.1
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Frame = +1
Query: 613 EGETGRARAAQAVQHGARFKRKLQRRLTRQALAE-AKAIKEQIHVLVYVAELVAKDPVLA 789
E + A AA A Q A + L R LTR ALAE A+ VL Y +A
Sbjct: 3 ETSSPAAAAAAAAQTDAEREEALDRMLTRLALAEDARLAPLLARVLPYAITSLASPAASV 62
Query: 790 WKKAKELYASLSQPEPENQARPVTLEELMVLLTRETARKVV 912
K E+ + +++ + + +L + T T+ +V
Sbjct: 63 RKLVMEILSHINKRVKHRPEISLPMLDLWRIYTESTSSTIV 103
>11_08_0102 -
28354880-28355056,28355159-28355376,28355634-28355712,
28356451-28356519,28356602-28356681,28356818-28356925,
28357103-28357169,28357894-28357959,28358042-28358119,
28358198-28358250,28359542-28359575,28359851-28359865,
28360082-28360109,28360628-28360716,28361688-28361810,
28362192-28362296,28362381-28362485,28362924-28363139,
28364656-28364845,28365193-28365418,28366096-28366162
Length = 730
Score = 31.1 bits (67), Expect = 2.1
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 283 LALPAVQLLETPIVQLDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQYV--LRRADSVTR 456
L + A L T +++KF+ K+LD E + +Y+ PE++ S++++++ L + R
Sbjct: 168 LGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKI-SKSKRFMSKLEKCHHAGR 226
Query: 457 LGTAVLD 477
L +D
Sbjct: 227 LSLIAID 233
>08_02_0885 + 22268287-22268988
Length = 233
Score = 30.3 bits (65), Expect = 3.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 611 LKGRRAGPEQPRRCSTEPGSRGSC--RGDSPGKLWPK 715
+KG+ A P PRRC GS +C R + P + W K
Sbjct: 51 VKGKTAIPATPRRCRRPDGSNPACKMRWERPPEGWMK 87
>02_01_0319 -
2148788-2148892,2149474-2149557,2149643-2149723,
2150303-2150480,2150811-2150954,2151048-2151094,
2151353-2151409,2151566-2151664,2151867-2151989,
2152083-2152205,2152594-2152707,2152972-2153160,
2153412-2153578,2153904-2153988,2155431-2155628,
2155978-2156175
Length = 663
Score = 30.3 bits (65), Expect = 3.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 939 VCVCIVDEMHDLSCCFPXEEYHQLFKSYRPRLILGFWLTERRVK 808
+C+C V++ ++ CC+ + FK + R+ WL+E +K
Sbjct: 272 LCICSVNKALNMVCCWAEDPNSDAFKRHLARVPDFLWLSEDGMK 315
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 29.9 bits (64), Expect = 4.9
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -1
Query: 258 LTQGHRPTKERVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKIRHGWLI 112
L Q RP LPY V H T HD + C+ HF R WL+
Sbjct: 249 LVQSDRPATSVSELPYVFVDLD-HGCTYHDKLFYCDDERHFLHRAPWLL 296
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 29.1 bits (62), Expect = 8.5
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 637 AAQAVQHGARFKRKLQRRLTRQALAE-AKAIKEQIHVLVYVAELVAKDPVLAWKKAKELY 813
AA A Q A + L R LTR ALAE A+ VL Y +A K E+
Sbjct: 7 AAAAAQTDAEREEALDRMLTRLALAEDARLAPLLARVLPYAITSLASATASVRKLVMEIL 66
Query: 814 ASLSQPEPENQARPVTLEELMVLLTRETARKVV 912
+ +++ + + +L + T T+ +V
Sbjct: 67 SHINKRVKHRPEISLPMLDLWRIYTESTSSTIV 99
>10_08_0207 -
15822080-15822190,15822886-15822945,15823021-15823181,
15825573-15825629,15826521-15826584
Length = 150
Score = 29.1 bits (62), Expect = 8.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 375 HTLLDHIQRLAEELVQLYDRSFQELNRREC*LNA 274
H+ LD ++R EE+ +LY F+ L R++ +NA
Sbjct: 72 HSELDKLKREVEEMKKLYKELFESLARKDKDVNA 105
>03_01_0263 +
2038139-2038445,2038610-2038618,2038759-2039126,
2039724-2039960,2040140-2040412
Length = 397
Score = 29.1 bits (62), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 890 GKQQERSCISSTIHTQTFQETSXQGMSIVTKHWS 991
G E C+S+ + + FQ T +S+V+K WS
Sbjct: 106 GFATEHKCMSTDVIRKAFQATEEGFLSLVSKQWS 139
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 29.1 bits (62), Expect = 8.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 142 VSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALP 294
V R+ I V+S + +K+ + P FRW S G+ G+ +A+P
Sbjct: 304 VRRLYDIANVLSSLNFIDKIQ-QADSRKPAFRWLGSAGKPKAENGVTIAVP 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,511,292
Number of Sequences: 37544
Number of extensions: 679632
Number of successful extensions: 2070
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2069
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4283391936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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