Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_C10
         (1359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical...    35   0.15 
AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical...    35   0.15 
AL033514-6|CAA22096.2|  373|Caenorhabditis elegans Hypothetical ...    33   0.47 
U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical pr...    30   4.3  
U41027-1|AAV28336.1|  480|Caenorhabditis elegans Hypothetical pr...    30   4.3  

>AL117203-21|CAN86632.1|  171|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18b protein.
          Length = 171

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 768 NQFRDIHQNVDLFFDSLGFGQSLPGESPLQLPLEPGSVLHRLGCS 634
           + FRD+H N+DL  D+     S  G + + L +E G  + R GC+
Sbjct: 82  DHFRDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRIVRSGCA 126


>AL117203-20|CAB55118.1|  244|Caenorhabditis elegans Hypothetical
           protein Y48C3A.18a protein.
          Length = 244

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 768 NQFRDIHQNVDLFFDSLGFGQSLPGESPLQLPLEPGSVLHRLGCS 634
           + FRD+H N+DL  D+     S  G + + L +E G  + R GC+
Sbjct: 155 DHFRDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRIVRSGCA 199


>AL033514-6|CAA22096.2|  373|Caenorhabditis elegans Hypothetical
           protein Y75B8A.6 protein.
          Length = 373

 Score = 33.1 bits (72), Expect = 0.47
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +3

Query: 633 PSSPGGAARSQVQEEAAEETHQASSGRSQGYQRTNPRFGVCRGIGCK 773
           P  P    RSQ +    + T + SS RS     T+ R GVCRG  CK
Sbjct: 54  PPVPSSMNRSQSRASCPQSTREMSSHRST----TSRRCGVCRGCQCK 96


>U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical
           protein R08E3.4a protein.
          Length = 447

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 736 IHVLVYVAELVAKDPVLAWKKAKELYASLSQPEPENQARPVTLEELMVLLTRE 894
           +H +  VA +V +D V  W +      S+S P P  Q+      E  + LT +
Sbjct: 354 LHNIPAVAAIVKQDQVQLWSEQTSSSVSVSAPSPSEQSHSPPANESSLSLTEK 406


>U41027-1|AAV28336.1|  480|Caenorhabditis elegans Hypothetical
           protein R08E3.4b protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 736 IHVLVYVAELVAKDPVLAWKKAKELYASLSQPEPENQARPVTLEELMVLLTRE 894
           +H +  VA +V +D V  W +      S+S P P  Q+      E  + LT +
Sbjct: 354 LHNIPAVAAIVKQDQVQLWSEQTSSSVSVSAPSPSEQSHSPPANESSLSLTEK 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,561,459
Number of Sequences: 27780
Number of extensions: 533020
Number of successful extensions: 1434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3829657504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)