Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C09
(1275 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 37 0.007
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 31 0.34
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 30 0.79
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 29 1.8
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 29 1.8
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 28 2.4
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 28 2.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 2.4
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 28 3.2
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 3.2
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 28 3.2
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 4.2
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 5.5
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 27 5.5
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 27 7.3
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 27 7.3
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 36.7 bits (81), Expect = 0.007
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +2
Query: 101 ENSINQDELIMKQQREIEKEISETIPXVGEIEELQTLEKEYNEDPIYLLKVKD 259
ENSI QDE+ +Q +IEK+ E I V E E L TLE E E P ++V+D
Sbjct: 908 ENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTTLE-ETIEIPANDIEVQD 959
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 31.1 bits (67), Expect = 0.34
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 131 MKQQREIEKEISETIPXVGEIEELQTLEKEYNEDPI 238
+ QQ + E +E + +G E L LEK Y EDP+
Sbjct: 90 LDQQVMVRHEAAEALGALGFTESLPVLEKYYKEDPL 125
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 29.9 bits (64), Expect = 0.79
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +2
Query: 59 DDASSXSGITGNTVENSINQDEL---IMKQQREIEKEISETIPXVGEIE-ELQTLEKEYN 226
+D SG+ G+ + +S D+L I++ Q EK+ G +E L +L +
Sbjct: 85 EDLGGPSGLDGSQLSSSFQNDQLLNVILEDQFATEKDSDNGAVNYGALEAALNSLMSQVT 144
Query: 227 EDPIYLLKVKDLSSKY 274
I +KDL + Y
Sbjct: 145 SKEILYEPLKDLEANY 160
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 580 GVPSSYYIWPAADRPRILSEFY*RTTHCY*VL*TGSGTDV 699
G+ SS Y+W AA + + T H VL TG GT +
Sbjct: 142 GLASSIYLWSAASGKVVQLHDFGATNHVTSVLWTGKGTQL 181
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +2
Query: 320 AFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFMEVIQRVGEHAG 499
AF+++ +E K E D EIAKNS + A G D + + I+ VG+ +
Sbjct: 84 AFTFS-IENFKRSKYEVDMLMEIAKNSLTQITAHG-------DLVDQYGIRIRIVGDLSR 135
Query: 500 STPDLIET 523
PD++ET
Sbjct: 136 LQPDVLET 143
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 137 QQREIEKEISETIPXVGEIE-ELQTLEKEYNEDPIYLLKVKDLSSKYKSIRRTRPD 301
Q + EK+ E + E +LQT+ +EY + +++++++L + R+T D
Sbjct: 218 QAKTWEKKFREALRDSKEYAAQLQTIHEEYEQQQAHIVRMEELIHAVEKERKTETD 273
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +2
Query: 338 LERLLTDKQEYDKFYEIAKNSKDILVA-LGFSQFTVEDFYETFM---EVIQRV 484
LERLL+D Q +KF + KN + LV +G + + F T + EVI+R+
Sbjct: 32 LERLLSDAQPTEKFNSLIKNMAERLVLFVGQIEELKDAFCNTTIVSEEVIERI 84
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 113 NQDELIMKQQREIEKEI---SETIPXVGEIEELQTLEKE 220
NQ+ LI++++ E+EK I SE + +E Q++E+E
Sbjct: 141 NQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQE 179
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/48 (20%), Positives = 30/48 (62%)
Frame = +2
Query: 95 TVENSINQDELIMKQQREIEKEISETIPXVGEIEELQTLEKEYNEDPI 238
+ +NS ++ K++++ + + +T+ +I+E++ +KE +E+P+
Sbjct: 263 SAQNSAKLEKEKAKEKQKDKDQEQDTVSDKNQIDEIEKGQKEVDEEPV 310
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 125 LIMKQQREIEKEISETIPXVGEIEELQTLEKEYN 226
++ +QQREI+ + + IEELQTL N
Sbjct: 53 VVQRQQREIDNQKRDLCTKTKHIEELQTLLSNAN 86
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 428 SQFTVEDFYETFMEVIQRV-GEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITS 604
S+ +E Y+ V + G P L E + H N + SD+ + +L+ S
Sbjct: 132 SEVELERTYQDQQSVPDAISGFQPDMDPRLREVLEQLEHSDINDEETSDFDEEFEKLVAS 191
Query: 605 GQLQTDQEFYQNFIE 649
G+ + + Q F+E
Sbjct: 192 GKADESEFYAQPFVE 206
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 80 GITGNTVENSINQDELIMKQQREIEKEISETIPXVGEIEELQTLEKEYNEDPIYLLKVKD 259
GITG + E Q + + QQ ++KE+ + + E E++ N+ P L + +
Sbjct: 206 GITGQSFERGDAQLQPVKLQQMPMDKEMEKIVEMDLEEEDMMHQNDPNNQSPKLLKEFRK 265
Query: 260 L 262
L
Sbjct: 266 L 266
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 194 EELQTLEKEYNEDPIYLLKVKDLSSKYKSIRRTRPDGNCFFRAFSYAYLERLLTD 358
+E+ TL+ +Y+E ++ K +S S R + +FS+A +++L D
Sbjct: 682 DEMYTLDNDYSEPDAFMTAKKKISKLNDSSRAILGWASLLGPSFSFATVKKLCKD 736
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Frame = +2
Query: 53 MADDAS--SXSGITGNTVENSIN--QDELIMKQQREIEKEISETIPXVGEIEELQTLEKE 220
M+DD S + S ++G+ + S+ +D I+K + +E+ TI + E++++ E+E
Sbjct: 11 MSDDDSFDTISILSGSMDQLSVGSMEDSGILKGSKTWLEELESTIDDLIEVKKIGAKERE 70
Query: 221 YNEDPIYLL 247
+ + IY++
Sbjct: 71 EHLEKIYVI 79
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 167 ETIPXVGEIEELQTLEKEYN 226
+T+P +G++ LQ + KEYN
Sbjct: 206 DTLPEIGKLFHLQEVHKEYN 225
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 344 RLLTDKQEYDKFYEIAKNSKDILVALGFSQFTV-EDFYET 460
RL EYD+FY I S + + SQF + ED ET
Sbjct: 172 RLDPKSSEYDEFYIINYASVTKSITISHSQFAINEDINET 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,543,197
Number of Sequences: 5004
Number of extensions: 92801
Number of successful extensions: 248
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -