Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C09
(1275 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81039-6|CAB02772.1| 284|Caenorhabditis elegans Hypothetical pr... 163 2e-40
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 32 1.00
Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 31 1.3
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 31 1.3
Z68161-11|CAA92300.1| 347|Caenorhabditis elegans Hypothetical p... 30 4.0
Z68159-12|CAA92289.1| 347|Caenorhabditis elegans Hypothetical p... 30 4.0
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 29 5.3
U41009-1|AAA82278.3| 501|Caenorhabditis elegans Hypothetical pr... 29 7.0
Z81098-1|CAB03183.1| 581|Caenorhabditis elegans Hypothetical pr... 29 9.3
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 29 9.3
>Z81039-6|CAB02772.1| 284|Caenorhabditis elegans Hypothetical
protein C25D7.8 protein.
Length = 284
Score = 163 bits (396), Expect = 2e-40
Identities = 95/271 (35%), Positives = 149/271 (54%), Gaps = 9/271 (3%)
Frame = +2
Query: 89 GNTVENSINQDELIMKQQ--REIEKEISETIPXVGEIEELQTLEKEYNEDP--IYLLKVK 256
G E + DE++++ Q + IE E +++P V + L EY+ + +L K
Sbjct: 12 GQAAEAVVTDDEIVLQDQQLKTIEDE-QKSVPLVATLAPFSILCAEYDNETSAAFLSKAT 70
Query: 257 DLSSKYKSIRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQF 436
+LS Y IR R DGNCF+RA +E +L D+ +KF +++ LV LGF +
Sbjct: 71 ELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGFPDW 130
Query: 437 TVEDFYETFMEVIQRVGEHAG-STPDLIETVRMELHDKFNKQGYSDYIVVYLRLITSGQL 613
T DF + F+E ++++ H+G T + + T+ N G ++YI+++ RLITS L
Sbjct: 131 TCTDFCDFFIEFLEKI--HSGVHTEEAVYTI-------LNDDGSANYILMFFRLITSAFL 181
Query: 614 QTDQEFYQNFIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQ 793
+ + E Y FI+ TV ++C QE+EPM+K++DH+ I +L A VR++YMDR
Sbjct: 182 KQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPN 241
Query: 794 VIAH-DFPEGS---TPLVHLLYRPGHYDILY 874
H D P P + LLYRPGHYD++Y
Sbjct: 242 GGWHYDIPSDDQQIAPEITLLYRPGHYDVIY 272
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 31.9 bits (69), Expect = 1.00
Identities = 23/61 (37%), Positives = 30/61 (49%)
Frame = +2
Query: 209 LEKEYNEDPIYLLKVKDLSSKYKSIRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEI 388
+EK NE + + K D + K I DGNCF+RA S+ LT Q+Y K I
Sbjct: 695 VEKLENEKSVVMKKF-DRPGRVKGIES---DGNCFYRAISWC-----LTGSQKYHKALRI 745
Query: 389 A 391
A
Sbjct: 746 A 746
>Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 284 RRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETF 463
R PDGNCF+RA S+ +T Q + + A L F ++ + YE +
Sbjct: 599 RGITPDGNCFYRAISW-----WITGVQSHHMIFREAVGKHLKKNELMFKKYCHNEIYEKY 653
Query: 464 MEVIQRVG 487
+E R G
Sbjct: 654 VENAMRDG 661
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 284 RRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETF 463
R PDGNCF+RA S+ +T Q + + A L F ++ + YE +
Sbjct: 599 RGITPDGNCFYRAISW-----WITGVQSHHMIFREAVGKHLKKNELMFKKYCHNEIYEKY 653
Query: 464 MEVIQRVG 487
+E R G
Sbjct: 654 VENAMRDG 661
>Z68161-11|CAA92300.1| 347|Caenorhabditis elegans Hypothetical
protein F20C5.6 protein.
Length = 347
Score = 29.9 bits (64), Expect = 4.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 80 GITGNTVENSI-NQDELIMKQQREIEKEISETIPXVGEIEELQTLEKE 220
G G+ + +I NQ+EL+ KQ EIE+ E+ + + EE++ + E
Sbjct: 68 GECGSELRATIKNQEELLKKQSEEIERCKEESRMLIQQKEEMENIHSE 115
>Z68159-12|CAA92289.1| 347|Caenorhabditis elegans Hypothetical
protein F20C5.6 protein.
Length = 347
Score = 29.9 bits (64), Expect = 4.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 80 GITGNTVENSI-NQDELIMKQQREIEKEISETIPXVGEIEELQTLEKE 220
G G+ + +I NQ+EL+ KQ EIE+ E+ + + EE++ + E
Sbjct: 68 GECGSELRATIKNQEELLKKQSEEIERCKEESRMLIQQKEEMENIHSE 115
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 29.5 bits (63), Expect = 5.3
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +2
Query: 284 RRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETF 463
R+ DGNCF+RA S+ LT + + + A F ++ ++ YE +
Sbjct: 326 RKIEADGNCFYRAVSW-----WLTGVESHHMIFREAVGKHLKKNEPKFKKYCHDEIYEKY 380
Query: 464 MEVIQRVGEHAGSTPDLIETVRM 532
++ + R G A ST ++ M
Sbjct: 381 VDNVMREGVWA-STCEIFAMANM 402
>U41009-1|AAA82278.3| 501|Caenorhabditis elegans Hypothetical
protein C06E7.2 protein.
Length = 501
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 98 VENSINQDELIMKQQREIEKEISETIPXVGEIEELQTLEKEYNE 229
+ N I DE+ +++ + EKE++E I + EE EK+ E
Sbjct: 400 ISNEIPVDEISKEEEEKAEKELNEIIKELKSDEEAVDGEKDVGE 443
>Z81098-1|CAB03183.1| 581|Caenorhabditis elegans Hypothetical
protein K07A12.1 protein.
Length = 581
Score = 28.7 bits (61), Expect = 9.3
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = -3
Query: 835 DKRSRTLWKIMCYHLATFTPIHVLHSDAHLECITQCYDMDMVRLFVHRFHFLST---KLS 665
D R +W + Y ATF P H H +L+ Y+ L +HR H L+ +
Sbjct: 192 DLIERGIWYVDQYAAATFEPFHWKHRMDYLD-----YENRAFYLLLHR-HMLNAAHKRCW 245
Query: 664 NSAWSFNKILIK 629
+AW+ K++ K
Sbjct: 246 ETAWNTAKMIFK 257
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 28.7 bits (61), Expect = 9.3
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Frame = +2
Query: 359 KQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFM--EVIQRV----GEHAGSTPDLIE 520
K E +F+ ++ +L +G +V FY+ + + R +GS +
Sbjct: 120 KPEGSRFFTLSPKIYGLLSDIGVKTHSVMKFYDEHVGSRSVNRSDLEPANLSGSQWVTAD 179
Query: 521 TVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQNFIEGPRTVT 667
++ +L +KF+K+ Y I+ + L + +Q+F F E P T +
Sbjct: 180 KLKKKLSEKFSKELYGQVIIAFEHLASLPGSAIEQKFLMEFRE-PMTAS 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,346,546
Number of Sequences: 27780
Number of extensions: 527025
Number of successful extensions: 1346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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