Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C07
(1434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0904 + 20717005-20718087 42 0.002
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.73
12_02_1174 - 26696869-26698191 31 1.7
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 31 2.2
>04_03_0904 + 20717005-20718087
Length = 360
Score = 41.5 bits (93), Expect = 0.002
Identities = 34/161 (21%), Positives = 37/161 (22%)
Frame = -3
Query: 1117 PPPHQXQPXXXPXTXHXTXHTXXXPPTKPXKXPXXIXXXPTXXXRXPKXXXPLXXXXPKX 938
PPP+ +P T +T P KP PT P P PK
Sbjct: 93 PPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKP 152
Query: 937 XXXPKXXTXXLXPHXXXPPPKXXPKNXXXXXTPPXKTXPXXXXXXXHXXPDXXPGPXXXX 758
P P P P P P P P
Sbjct: 153 TPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPT 212
Query: 757 PXPXXRKXXXXXXEPXXXKPQPAGRQAPRRXXXXXXXXPXP 635
P P K P KPQP P P P
Sbjct: 213 PTPPSYKPQPKPNPPPTYKPQPKPNPPPTYKPAPPTYKPQP 253
Score = 36.7 bits (81), Expect = 0.045
Identities = 33/129 (25%), Positives = 34/129 (26%), Gaps = 6/129 (4%)
Frame = -3
Query: 1042 PTKPXKXPXXIXXXPTXXXRXPKXXXPLXXXXPKXXXXPKXXTXXLXPHXXXPPPKXXPK 863
P KP K + PK P PK P T P PP PK
Sbjct: 44 PEKPPKEHKPPHHHEPKPEKPPKEHKPPAYTPPKPTPTPPTYT----PTPKPTPPPYTPK 99
Query: 862 NXXXXXTP------PXKTXPXXXXXXXHXXPDXXPGPXXXXPXPXXRKXXXXXXEPXXXK 701
TP P T P P P P P P K P K
Sbjct: 100 PTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPPTYK 159
Query: 700 PQPAGRQAP 674
PQP P
Sbjct: 160 PQPKPTPTP 168
Score = 32.3 bits (70), Expect = 0.97
Identities = 29/127 (22%), Positives = 30/127 (23%)
Frame = -3
Query: 1117 PPPHQXQPXXXPXTXHXTXHTXXXPPTKPXKXPXXIXXXPTXXXRXPKXXXPLXXXXPKX 938
PP P T T PT P P PT PK P PK
Sbjct: 75 PPKPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTP--PKPTPPTYKPQPKP 132
Query: 937 XXXPKXXTXXLXPHXXXPPPKXXPKNXXXXXTPPXKTXPXXXXXXXHXXPDXXPGPXXXX 758
P T + P P P P P P P P
Sbjct: 133 TPAPYTPTPTPPTYKPQPKPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPT 192
Query: 757 PXPXXRK 737
P P K
Sbjct: 193 PTPPSYK 199
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.7 bits (71), Expect = 0.73
Identities = 39/180 (21%), Positives = 43/180 (23%), Gaps = 5/180 (2%)
Frame = -2
Query: 1139 PXXXLXXPTPXPTPTPXXTXNKXXDXPHXXXPPHKTPXXPXXDXXXXXXXXPXXXGXXXP 960
P P P P P P + NK P PP P P + P
Sbjct: 537 PSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPN 596
Query: 959 XXXXSXXXXPXQXXNXXT-XXXXXXPPXQXXXQEPXXPXXPPXXNXPXXPXXXXTXXPXX 783
S P PP P PP P P P
Sbjct: 597 CLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAP 656
Query: 782 XPRTXXXXXXPXRXKXXXAXXRTPXXKAAAS-XPPGXQAXPXXXGXXTK---XPXAXPPP 615
P + RTP A +S PP P T P A PPP
Sbjct: 657 GIGNKFPAPPPP-PPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAPPPP 715
Score = 29.1 bits (62), Expect = 9.0
Identities = 19/84 (22%), Positives = 21/84 (25%)
Frame = -3
Query: 1117 PPPHQXQPXXXPXTXHXTXHTXXXPPTKPXKXPXXIXXXPTXXXRXPKXXXPLXXXXPKX 938
PPP P P + PP P P + P P P
Sbjct: 563 PPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPP 622
Query: 937 XXXPKXXTXXLXPHXXXPPPKXXP 866
P L P PPP P
Sbjct: 623 PPPPLPNHSVLPPPPPPPPPPSLP 646
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.5 bits (68), Expect = 1.7
Identities = 28/141 (19%), Positives = 35/141 (24%)
Frame = -3
Query: 1114 PPHQXQPXXXPXTXHXTXHTXXXPPTKPXKXPXXIXXXPTXXXRXPKXXXPLXXXXPKXX 935
PPH+ P PP P + P P PK P P
Sbjct: 137 PPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSV--KPPVVQ---PKPQPPPSLQPPSPP 191
Query: 934 XXPKXXTXXLXPHXXXPPPKXXPKNXXXXXTPPXKTXPXXXXXXXHXXPDXXPGPXXXXP 755
P + P P P+ P PP T P + P P P
Sbjct: 192 PPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPAVVEPKPQPPPPPP 251
Query: 754 XPXXRKXXXXXXEPXXXKPQP 692
+ +P P P
Sbjct: 252 RAPVKMPRVLEPKPSPPPPSP 272
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 31.1 bits (67), Expect = 2.2
Identities = 21/85 (24%), Positives = 21/85 (24%)
Frame = -3
Query: 886 PPPKXXPKNXXXXXTPPXKTXPXXXXXXXHXXPDXXPGPXXXXPXPXXRKXXXXXXEPXX 707
PPP P TPP H P P P P P P
Sbjct: 57 PPPPPLPTPTVTTPTPPPPPPAPRPPRRHHRIPPPPP-PLLPTPPPPPASISPTPAPPLP 115
Query: 706 XKPQPAGRQAPRRXXXXXXXXPXPP 632
P PA P P PP
Sbjct: 116 PPPAPAPPPTPTPKFPSSSANPSPP 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,370,063
Number of Sequences: 37544
Number of extensions: 261945
Number of successful extensions: 827
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4548026336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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