Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C05
(1260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 33 0.083
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 33 0.11
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.15
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 30 0.59
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 29 1.4
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 29 1.8
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 29 1.8
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 28 2.4
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 3.1
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 27 4.1
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 4.1
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 27 7.2
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 9.5
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 33.1 bits (72), Expect = 0.083
Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 11/181 (6%)
Frame = +1
Query: 151 SFEIRMSL---TIQQIILDAKRLAGRLKERETEADALLSETQATYRQIHTMKQYKEEVDT 321
S+E ++S+ +I +I + L ++ + + ALL Q+ + T+K ++ +
Sbjct: 305 SYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLRE 364
Query: 322 LN---EASRERPRGALI---ASIERESQLMRGVQRENGELRAALEDHRRALEL--IMSKY 477
+N E + R L A I R + + L +L + LE +S+
Sbjct: 365 MNANYETEMKEARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQ 424
Query: 478 RQHTEKKIWESRIDFTSAINEKQQELIRQQAERINEMTTVMYKAINMDENSEARKDEELY 657
R ++ +S I + K + L+ + E N + K + +DE + KDE+L
Sbjct: 425 RDLLYQEQIQSSIKDMENVFRKNEYLMEELNELKNNLEVESSKVLRLDEEMKCLKDEQLS 484
Query: 658 Q 660
Q
Sbjct: 485 Q 485
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 32.7 bits (71), Expect = 0.11
Identities = 36/153 (23%), Positives = 68/153 (44%)
Frame = +1
Query: 253 LSETQATYRQIHTMKQYKEEVDTLNEASRERPRGALIASIERESQLMRGVQRENGELRAA 432
L+ T YR+ M Q E + + ER + L ++ +L RG Q N +L+
Sbjct: 1626 LTSTVNKYREQLAMVQSLNEHAESSLSKAERSKNYLTGRLQEVEELARGFQTTNADLQNE 1685
Query: 433 LEDHRRALELIMSKYRQHTEKKIWESRIDFTSAINEKQQELIRQQAERINEMTTVMYKAI 612
L D + K +++ + +S D+ + + +K++ L++Q I+E + +
Sbjct: 1686 LAD-------AVVKQKEYEVLYVEKSN-DYNTLLLQKEK-LMKQ----IDEFHVIRVQ-- 1730
Query: 613 NMDENSEARKDEELYQRLITENKGLREMLDLSR 711
D +KD+ L+QR E G + L+ R
Sbjct: 1731 --DLEEREKKDQLLFQRYQKELNGFKVQLEEER 1761
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 32.3 bits (70), Expect = 0.15
Identities = 29/126 (23%), Positives = 61/126 (48%)
Frame = +1
Query: 316 DTLNEASRERPRGALIASIERESQLMRGVQRENGELRAALEDHRRALELIMSKYRQHTEK 495
++++E+ E+P +A IE E + + +GE++ +E + S+ EK
Sbjct: 97 NSVDESVAEKPEKEDLAVIESEDK----AAKPDGEIKKNVETE------VTSRSTSSQEK 146
Query: 496 KIWESRIDFTSAINEKQQELIRQQAERINEMTTVMYKAINMDENSEARKDEELYQRLITE 675
E ++ +NE++ + I++ ERIN++T Y + N++ D E Q L+++
Sbjct: 147 DELEKQVKTLHDLNEQKDKKIKELKERINDLT---YDYETLKANAD---DSEGKQTLVSK 200
Query: 676 NKGLRE 693
+ E
Sbjct: 201 REAALE 206
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 30.3 bits (65), Expect = 0.59
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 604 KAINMDENSEARKDEELYQRLITENKGLREMLDLSRRYGSDRVMAPPMEDKDVQ 765
K +D++ EEL +++ E + ++ +++Y SD+ AP D+Q
Sbjct: 446 KKTGIDDSEVGVSIEELKDKILKEKPDYKSFVEEAQKYVSDKPKAPSFAGSDIQ 499
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3
Query: 325 LMYQLLLYTVSLYEFVDKLLGFRSTEHQPLFR 230
L++ LL+TV L FV L+GFRS E P R
Sbjct: 439 LIFLYLLFTVPL-SFVGSLIGFRSREFVPPVR 469
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 28.7 bits (61), Expect = 1.8
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Frame = +1
Query: 250 LLSETQATYRQIHTMKQYKEEVDTLN--EASRERPRGALIASIERESQLMRGVQRE--NG 417
+L T+ +IH +KQ+ + D N + R+ LI + VQ +
Sbjct: 12 VLDSTRTLCLRIHELKQHSRDADDQNPEQIKRQLMSKLLILREANRKSYEQLVQAKTITA 71
Query: 418 ELRAALEDHRRALELIM-SKYRQHTEKKIWESRIDFTSAIN-EKQQELIRQQAERINEMT 591
E ++ L++ R L+ + K T K +E + +A+ ++E +++ E +
Sbjct: 72 EHKSELDNARIRLQALQYKKLHLKTIIKNYEEKEHIYTALPLVSKEEFLKEHPEFKSSND 131
Query: 592 TVMYKAINMDENSEARK----DEELYQR---LITENKGLREML 699
+ AI DE E ++ +EL +R LI+ENK R L
Sbjct: 132 HDLMLAILEDELKERQRLSTLKQELLKRKAALISENKAKRNAL 174
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 28.7 bits (61), Expect = 1.8
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Frame = +1
Query: 208 LAGRLKERETEADALLSETQATY-RQIHTMKQYKEEVDTLNEASRERPRGALIASIERES 384
L L + + D+ SE +A + I ++K E+ L E E A I+ +
Sbjct: 233 LESSLAKSNSLLDSSKSEMEALKAKSISDATKHKNEIFQLEEKLHEASHEAEISIKKLND 292
Query: 385 QLMRGVQRENG---ELRAALEDHRRAL-ELIMSKYRQHTEKKIWESRIDFTSAINEKQQE 552
R + EN LE + + + ELI+++ + ES ID A E+ ++
Sbjct: 293 AENRIKELENNPTLSFNPELEKNLKLMQELIVAESSKTQHIVELESCIDSLKAETERWKK 352
Query: 553 L-IRQQAERINE------MTTVMYKAINMDENSEARKDEELYQRLITE 675
+ I ++ +I+E MTTV K+I + DE+LY R E
Sbjct: 353 VAINAKSAKIDEDIRLFTMTTVPMKSIRELISPNGFLDEQLYIRYFVE 400
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 199 AKRLAGRLKERETEADALLSETQATYRQIHTMKQYKEEVDTLNEASRERPRG 354
A R+ R+K E D L AT ++ HT+ +D SR RP G
Sbjct: 346 ALRVYERIKNEEGSLDFLHRAFSATIKEYHTVWTATPRLDPKTGLSRYRPGG 397
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.9 bits (59), Expect = 3.1
Identities = 37/197 (18%), Positives = 83/197 (42%), Gaps = 8/197 (4%)
Frame = +1
Query: 130 TPFVSLFSFEIR-MSLTIQQIILDAKRLAGRLKERETEADALLSETQATYRQIHTMKQYK 306
T ++S + EI+ M LT Q++ + + G L E L E + +KQ K
Sbjct: 998 TKYISDYKTEIQEMRLTNQKMNEKSIQQEGSLSESLKRVKKLERENSTLISDVSILKQQK 1057
Query: 307 EEVDTLNEASRERPRGALIASIERESQLMRGVQRENGELRAALE--DHRRALELIMSKYR 480
EE+ L I ++E + + ++ +L+ LE + + L + +
Sbjct: 1058 EELSVLKGVQE-----LTINNLEEKVNYLEADVKQLPKLKKELESLNDKDQLYQLQATKN 1112
Query: 481 QHTEKKIWESRIDFTSAINEKQQELIRQQAERINEMTTVMYKAINMDEN-----SEARKD 645
+ E K+ E + S E + + ++ + +++ + + + EN S+
Sbjct: 1113 KELEAKVKECLNNIKSLTKELENK--EEKCQNLSDASLKYIELQEIHENLLLKVSDLENY 1170
Query: 646 EELYQRLITENKGLREM 696
++ Y+ L + +GL+++
Sbjct: 1171 KKKYEGLQLDLEGLKDV 1187
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 148 FSFEIRMSLTIQQIILDAKRLAGRLKE 228
FSFE + + + L +KRL GR+KE
Sbjct: 333 FSFEPHVERLLDDLYLFSKRLGGRIKE 359
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 4.1
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 5/175 (2%)
Frame = +1
Query: 178 IQQIILDAKRLAGRLKERETEADALLSETQATYRQIHTMKQYKEEVDTLNEASRERPR-G 354
IQ++ + ++L L +TE + L +E A ++ MK+Y SR + R
Sbjct: 1290 IQELEKEVEKLNASLNPLQTEINELKAEIGAKTASLNLMKEYN---------SRWKLRFQ 1340
Query: 355 ALIASIERESQLMRGVQRENGELRAALEDHRRALELIMSKYRQHTEKKIWESRIDFTSAI 534
+++ ER ++N E ALE ++ LE + + + T+ ++ ++ +++
Sbjct: 1341 SVLNKYERVDPTQLEELKKNCE---ALEKEKQELETKLQETAKETD--TFKQQV---NSL 1392
Query: 535 NEKQQELIRQQAERINEMTTVMYKAINMD-EN---SEARKDEELYQRLITENKGL 687
NE+ + L +++ E+ N T + A N EN S + L Q L +NK L
Sbjct: 1393 NEEVENL-KKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELTNKNKEL 1446
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 26.6 bits (56), Expect = 7.2
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Frame = +1
Query: 367 SIERESQLMRGVQRENGELRAALEDHRRALELIMSKYRQHTEKKIWESRIDFTS--AINE 540
S E + +++ ++ G + LE+ ++RQ I + +I A NE
Sbjct: 139 SEEEKCDVLKAYEKGKGSMDVILEEVMCCEISDEDRFRQVINNAIKDGKISKYKRFAPNE 198
Query: 541 KQQELIRQQAERINEMTTVMYKAINMDENSEARK-----DEELYQRLITENKGLR 690
K+++ + AER + + + +DEN + R+ DEE LI + R
Sbjct: 199 KKRKRRAKAAEREAQEAEELSMELGLDENLKKRRKAGASDEEALSALIRSRQKSR 253
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 9.5
Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 1/177 (0%)
Frame = +1
Query: 196 DAKRLAGRLKERETEADALLSETQATYRQIHTMKQYKEEVDTLNEASRERPRGALIASIE 375
D K L+E ++ L+ E Q T + + K ++++ + +R AL +
Sbjct: 582 DMKIQLDLLEELQSRVQKLVPERQTTLQALQ-QKCLQDDISESLMQNSKRKDSALDTN-- 638
Query: 376 RESQLMRGVQRENGELRAALEDHRRALELIMSKYRQHTEKKIWESRIDFTSAINEKQQEL 555
QL ++ LR L R +L++++ R T+K + +F + +
Sbjct: 639 ---QLFELELKKFDPLRNRLHASYRQQQLLLNEMRNVTQKL--KQNPEFLRKMEVYNNQF 693
Query: 556 IRQQAERINEMTTVMY-KAINMDENSEARKDEELYQRLITENKGLREMLDLSRRYGS 723
+ + N +++ + KAI+ + + + QRL NK L E L L R+ G+
Sbjct: 694 SKNKELCSNLLSSSLTAKAISEGVSKGLEYYKTVEQRLAEINKTLGEQLLLRRKQGA 750
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,099,574
Number of Sequences: 5004
Number of extensions: 79777
Number of successful extensions: 222
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -