Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_C04
         (1366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr...    30   3.3  
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr...    30   3.3  
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.     30   3.3  
U55774-2|AAA98009.3|  380|Caenorhabditis elegans Hypothetical pr...    29   7.6  

>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 496 DVRISIFFFSEWQARPHSLCRSLYYLKTSLNHRRQHGGH 612
           D R  +F  +E + R  ++ ++L+YL T+++HR     H
Sbjct: 173 DARTGVFIDNESEIRVETIDQALFYLNTAVDHRMIQDEH 211


>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 496 DVRISIFFFSEWQARPHSLCRSLYYLKTSLNHRRQHGGH 612
           D R  +F  +E + R  ++ ++L+YL T+++HR     H
Sbjct: 173 DARTGVFIDNESEIRVETIDQALFYLNTAVDHRMIQDEH 211


>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
          Length = 1066

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 496 DVRISIFFFSEWQARPHSLCRSLYYLKTSLNHRRQHGGH 612
           D R  +F  +E + R  ++ ++L+YL T+++HR     H
Sbjct: 173 DARTGVFIDNESEIRVETIDQALFYLNTAVDHRMIQDEH 211


>U55774-2|AAA98009.3|  380|Caenorhabditis elegans Hypothetical
           protein F35G8.1 protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 496 DVRISIFFFSEWQARPHSLCRSLYYLKTSLNHRRQ 600
           +VR  IFFF  W A   +L   L Y   + N RRQ
Sbjct: 282 NVRHFIFFFCHWTAMAGTLLNPLVYAYYNENFRRQ 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,523,471
Number of Sequences: 27780
Number of extensions: 455411
Number of successful extensions: 941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3850470860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)