Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_C02
(1297 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.61
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 7.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.61
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPP 1041
PPP P PPPPP G PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPP 1041
P PPP PPPPP G PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 941 GXXXNPPPPPKKXXXXXPPPPP 1006
G PPPPP PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 938 GGXXXNPPPPPKKXXXXXPPPPP 1006
GG PPPP PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPX---XXXGGXXNXPP 1041
PPPPP PPPPP GG P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPP 1005
PPPPP + PPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +1
Query: 937 GXXXXKPPPPPXKKXXXXPPPPPXXXXGGXXNXPP 1041
G PPPP + PPPPP N P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPPXXXKKXG 1062
PPPP K PPPP G PP + G
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPG 243
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPPXXXKKXG 1062
PPPP + PPPP G PP + G
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 256
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPPXXXKKXG 1062
PPPP + PPPP G PP + G
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 269
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPPXXXKKXG 1062
PPPP + PPPP G PP + G
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 282
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPPXXXKKXG 1062
PPPP + PPPP G PP + G
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 295
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPPXXXKKXG 1062
PPPP + PPPP G PP + G
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 308
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPPXXXKKXG 1062
PPPP + PPPP G PP + G
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 321
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPPXXXKKXG 1062
PPPP + PPPP G PP + G
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 334
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 955 PPPPPXKKXXXXPPPPPXXXXGGXXNXPP 1041
PPPP + PPPP G PP
Sbjct: 312 PPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/41 (29%), Positives = 13/41 (31%)
Frame = +2
Query: 941 GXXXNPPPPPKKXXXXXPPPPPXXXXGGXXTXPXKXXKXPG 1063
G PPPPP+ PPP P PG
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.156 0.531
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,543
Number of Sequences: 5004
Number of extensions: 36979
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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