Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B24
         (1280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    36   0.016
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.45 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   2.6  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   7.4  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   9.7  

>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 234 MTRGNQRDLARAKNQKKQVEMQKKKNASEKT 326
           M+RGNQRD+ RA+N KK  +  KKK A + T
Sbjct: 1   MSRGNQRDVDRARNLKKS-QASKKKQAGDPT 30


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 1170 PPXPGGGXXXXXXXPPPPPPXPXKKXK 1090
            PP P  G       PPPPPP   KK K
Sbjct: 11   PPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPPXP 1105
            GP   PP PG         PPPPPP P
Sbjct: 760  GPPPPPPPPG---VAGAGPPPPPPPPP 783


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
            Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect(2) = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 1128 PPPPPPXP 1105
            PPPPPP P
Sbjct: 307  PPPPPPPP 314



 Score = 23.0 bits (47), Expect(2) = 2.6
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = -3

Query: 1179 KXXPPXPGGGXXXXXXXPPPPPP 1111
            K   P  G         PPPPPP
Sbjct: 291  KTQAPSSGDSANGGLPPPPPPPP 313


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 264 RAKNQKKQVEMQKKKNASEKTGLSLQ 341
           +AKN+KK+ + QKKK  + K  L  Q
Sbjct: 95  KAKNKKKKKKQQKKKKVTGKRDLDNQ 120


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 53  YTLIIAKSFFSNFTPIGEMEGGALS*VSTGLAYRPAFT 166
           Y L+ +  FFS F  IG+M   +L+ + T  A+ P  +
Sbjct: 222 YGLVASIIFFSGFQHIGKMREVSLAKLPTTKAFEPTLS 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,504,102
Number of Sequences: 5004
Number of extensions: 60226
Number of successful extensions: 257
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)