Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B24
(1280 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-3|AAK27862.1| 82|Caenorhabditis elegans Hypothetical ... 51 2e-06
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 0.15
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.58
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.58
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.58
Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical pr... 31 2.3
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 31 2.3
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 31 2.3
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 30 3.1
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 4.1
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 4.1
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 30 4.1
AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical ... 30 4.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 30 4.1
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 5.7
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 25 6.0
U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical pr... 25 6.1
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 24 6.6
Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical pr... 29 7.1
Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical pr... 29 7.1
>AC087079-3|AAK27862.1| 82|Caenorhabditis elegans Hypothetical
protein Y37E3.4 protein.
Length = 82
Score = 51.2 bits (117), Expect = 2e-06
Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Frame = +3
Query: 234 MTRGNQRDLARAKNQKKQVEMQKKKNASEK---TGLSLQERKHRDA 362
MTRGNQRDLAR KNQKK + +K++ AS + GLS+ R +RDA
Sbjct: 1 MTRGNQRDLAREKNQKKLADQKKRQGASGQDGNAGLSMDARMNRDA 46
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.9 bits (59), Expect(2) = 0.15
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 1182 PKXXPPXPGGGXXXXXXXPPPPPPXP 1105
P PP P PPPPPP P
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPP 1363
Score = 25.4 bits (53), Expect(2) = 0.15
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 1128 PPPPPPXPXKKXK 1090
PPPPPP P ++ K
Sbjct: 1390 PPPPPPLPSEEKK 1402
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.58
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 1170 PPXPGGGXXXXXXXPPPPPPXP 1105
PP P GG PPPPPP P
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPP 765
Score = 30.3 bits (65), Expect = 3.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 1170 PPXPGGGXXXXXXXPPPPPP 1111
PP P GG PPPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPP 747
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPP 1111
G PP PGG PPPPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPP 748
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPP 1111
G PP PGG PPPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 29.9 bits (64), Expect = 4.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPPXPXK 1099
GP PP PGG PPPPPP K
Sbjct: 757 GPPPPPPPPGG----CPPPPPPPPPGGFK 781
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.58
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 1170 PPXPGGGXXXXXXXPPPPPPXP 1105
PP P GG PPPPPP P
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPP 765
Score = 30.3 bits (65), Expect = 3.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 1170 PPXPGGGXXXXXXXPPPPPP 1111
PP P GG PPPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPP 747
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPP 1111
G PP PGG PPPPPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPP 748
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPP 1111
G PP PGG PPPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 29.9 bits (64), Expect = 4.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPPXPXK 1099
GP PP PGG PPPPPP K
Sbjct: 757 GPPPPPPPPGG----CPPPPPPPPPGGFK 781
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.58
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 1170 PPXPGGGXXXXXXXPPPPPPXP 1105
PP P GG PPPPPP P
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPP 348
Score = 30.3 bits (65), Expect = 3.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 1170 PPXPGGGXXXXXXXPPPPPP 1111
PP P GG PPPPPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPP 330
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPP 1111
G PP PGG PPPPPP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPP 331
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPP 1111
G PP PGG PPPPPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPP 347
Score = 29.9 bits (64), Expect = 4.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPPXPXK 1099
GP PP PGG PPPPPP K
Sbjct: 340 GPPPPPPPPGG----CPPPPPPPPPGGFK 364
>Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical
protein T05D4.5 protein.
Length = 482
Score = 30.7 bits (66), Expect = 2.3
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 249 QRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 362
+RD R K +K+ E +KKK+A EK +E+K +DA
Sbjct: 393 ERDERRTK--RKEEEEKKKKDAEEKKKKDAEEKKKKDA 428
Score = 29.9 bits (64), Expect = 4.1
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 228 IRMTRGNQRDLARAKNQKKQ--VEMQKKKNASEKTGLSLQERKHRDA 362
++M R +R + + +KK+ E +KKK+A EK ++ K +DA
Sbjct: 390 LKMERDERRTKRKEEEEKKKKDAEEKKKKDAEEKKKKDAEDEKKKDA 436
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 1197 GXGXGPKXXPPXPGGGXXXXXXXPPPPPPXPXK 1099
G G GP P PGGG PP PP P K
Sbjct: 622 GGGGGP---PRGPGGGGGGGPTGPPAPPKPPAK 651
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisomerase
III protein.
Length = 759
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 1197 GXGXGPKXXPPXPGGGXXXXXXXPPPPPPXPXK 1099
G G GP P PGGG PP PP P K
Sbjct: 622 GGGGGP---PRGPGGGGGGGPTGPPAPPKPPAK 651
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical protein
T16G1.1 protein.
Length = 695
Score = 30.3 bits (65), Expect = 3.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 1191 GXGPKXXPPXPGGGXXXXXXXPPPPPPXP 1105
G G PP G PPPPPP P
Sbjct: 513 GNGRPMKPPSSSGSGSNRRSGPPPPPPPP 541
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 1182 PKXXPPXPGGGXXXXXXXPPPPPPXP 1105
P PP P G PPPPPP P
Sbjct: 631 PPPPPPPPMGLPAVGAGAPPPPPPPP 656
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 1182 PKXXPPXPGGGXXXXXXXPPPPPPXP 1105
P PP P G PPPPPP P
Sbjct: 457 PPPPPPPPMGLPAVGAGAPPPPPPPP 482
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.9 bits (64), Expect = 4.1
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -3
Query: 1197 GXGXGPKXXPPXPG-GGXXXXXXXPPPPPPXP 1105
G G G P P GG PPPPPP P
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMP 683
>AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical
protein Y75B8A.7 protein.
Length = 648
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 237 TRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 356
+R + + +KK++E KK+ A +K LSL + K++
Sbjct: 246 SRETVAETEKMNGEKKKIEKDKKRKAGDKADLSLDDGKNK 285
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.9 bits (64), Expect = 4.1
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -3
Query: 1197 GXGXGPKXXPPXPG-GGXXXXXXXPPPPPPXP 1105
G G G P P GG PPPPPP P
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMP 683
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical protein
F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 9.4
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 1191 GXGPKXXPPXPGGGXXXXXXXPPPPPPXP 1105
G P PP P G PPPPP P
Sbjct: 498 GHAPNPPPPPPLLGIAPMSTNAPPPPPMP 526
Score = 24.2 bits (50), Expect(2) = 5.7
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 1170 PPXPGGGXXXXXXXPPPPPP 1111
PP PG PPPPP
Sbjct: 523 PPMPGMAPLSTGAPTPPPPP 542
Score = 23.4 bits (48), Expect(2) = 9.6
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -3
Query: 1185 GPKXXPPXPGGGXXXXXXXPPPPPP 1111
G PP P G PPPP P
Sbjct: 534 GAPTPPPPPPVGMANGGPPPPPPLP 558
Score = 23.4 bits (48), Expect(2) = 5.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 1128 PPPPPPXP 1105
PPPPPP P
Sbjct: 577 PPPPPPPP 584
Score = 23.4 bits (48), Expect(2) = 9.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 1128 PPPPPPXP 1105
PPPPPP P
Sbjct: 578 PPPPPPPP 585
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical protein
W03B1.9 protein.
Length = 633
Score = 25.0 bits (52), Expect(2) = 6.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -3
Query: 1128 PPPPPPXPXKKXK 1090
PPPPPP P ++ +
Sbjct: 446 PPPPPPPPRRRSR 458
Score = 22.6 bits (46), Expect(2) = 6.0
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 1170 PPXPGGGXXXXXXXPPPPPP 1111
PP G PPPPPP
Sbjct: 434 PPLQVGLVGRVPPPPPPPPP 453
>U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical protein
W03B1.5 protein.
Length = 581
Score = 25.0 bits (52), Expect(2) = 6.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -3
Query: 1128 PPPPPPXPXKKXK 1090
PPPPPP P ++ +
Sbjct: 394 PPPPPPPPRRRSR 406
Score = 22.6 bits (46), Expect(2) = 6.1
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 1170 PPXPGGGXXXXXXXPPPPPP 1111
PP G PPPPPP
Sbjct: 382 PPLQVGLVGRVPPPPPPPPP 401
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 24.2 bits (50), Expect(2) = 6.6
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 1170 PPXPGGGXXXXXXXPPPPPP 1111
PP P PPPPPP
Sbjct: 58 PPCPAQFCPPPPICPPPPPP 77
Score = 23.4 bits (48), Expect(2) = 6.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 1128 PPPPPPXP 1105
PPPPPP P
Sbjct: 73 PPPPPPMP 80
>Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical
protein F19C6.2b protein.
Length = 449
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 243 GNQRDLARAKNQKKQVEMQKKKNASEK 323
GN+ D + AK KKQV +KK+NA K
Sbjct: 301 GNEDDSSNAKYAKKQVFKKKKRNAFGK 327
>Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical
protein F19C6.2a protein.
Length = 495
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 243 GNQRDLARAKNQKKQVEMQKKKNASEK 323
GN+ D + AK KKQV +KK+NA K
Sbjct: 347 GNEDDSSNAKYAKKQVFKKKKRNAFGK 373
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,493,524
Number of Sequences: 27780
Number of extensions: 401230
Number of successful extensions: 3074
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2053
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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