Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B23
         (1208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    57   4e-09
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    34   0.034
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   2.3  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    28   3.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   5.2  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    27   5.2  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   6.9  

>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 57.2 bits (132), Expect = 4e-09
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = +2

Query: 524 PSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVALTVF 703
           P+   YGF +YL S     ++ +WA TP   L +F I+YY  ++W+ A+P  +L  L ++
Sbjct: 5   PTYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIP-TWLFVLVIY 63

Query: 704 AFLIYPSINM-ILTPHIDSPNTFQDKFS 784
             ++  + N  +LT    S     D+++
Sbjct: 64  IHVVLNAYNTEVLTKPFSSLECIVDQYA 91


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 34.3 bits (75), Expect = 0.034
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +1

Query: 19  GNPSDFXXSXPSSVGQKPSNRNNLTXKSRSLIIXSCTRISLNEKRITYQ*NQ 174
           G PS F  S  S  G KPS +N+L   + +LI  S T   ++E+ I+Y+  Q
Sbjct: 721 GQPSIFGVSGYSGAGTKPSPKNDLNVLTNNLIPYSLTD-HIHEREISYRLKQ 771


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 512 PAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVA 691
           PA T S  LY FF  L S+     + +W + P S +H+  +Y  P+K      P   L A
Sbjct: 690 PALT-SEWLY-FFDQLHSQCYKGNYELWRYIPYSIIHFHYLYATPEKCRLPHPPRSDLEA 747

Query: 692 LTVF 703
           L ++
Sbjct: 748 LKLY 751


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 506 HTPAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNI 634
           HT A T    + GF L+L S+T L     WAF   S    F +
Sbjct: 81  HTKAVTKGLKI-GFMLFLISETFLFASIFWAFFHSSLSPTFEL 122


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 4   ILAPIGNPSDFXXSXPSSVGQKPSNRNNLT 93
           ++ PIGNP D   S  +     PSN +N +
Sbjct: 392 MVRPIGNPPDLSASNEAEATMPPSNGSNFS 421


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 663 VDQYFCG***MLK*CRKLSGVKAQIQNIVRVVLLNKYRKKPYKDLDGV 520
           +DQ FC     +K CR+      +++  V +V  +  R++ Y DL+G+
Sbjct: 47  IDQIFCS---SMKRCRETIAPYLELKPEVPIVYTDLIRERVYGDLEGM 91


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 518 PTPSRSLYGFFLY-LFSKTTLTMFCIWAFTPDSFLHY 625
           PT    LYG  L  L SKTT ++  I A+ P   +HY
Sbjct: 122 PTLENILYGSNLSSLLSKTTHSILDILAWVPYGVMHY 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,899,018
Number of Sequences: 5004
Number of extensions: 75780
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)