Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B23
(1208 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760 64 3e-10
08_02_1388 + 26649874-26649905,26650243-26650365,26650980-266510... 50 4e-06
02_02_0595 + 11968298-11968329,11969405-11969438,11970216-119703... 50 4e-06
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 49 6e-06
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888 31 2.4
08_02_1349 - 26309330-26309881,26309902-26310534 30 4.2
08_01_0059 - 394001-394708 30 4.2
11_06_0257 + 21746643-21748091 29 9.7
>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
Length = 184
Score = 63.7 bits (148), Expect = 3e-10
Identities = 27/83 (32%), Positives = 45/83 (54%)
Frame = +2
Query: 536 LYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVALTVFAFLI 715
+YGF + + T++ +WA+ P+ L I YYP +YW+ A+P F++ T ++
Sbjct: 53 VYGFVGSITTVIATTVYLVWAYMPERCLRSLGITYYPSRYWALAVP-SFVIVATALCMVV 111
Query: 716 YPSINMILTPHIDSPNTFQDKFS 784
Y N + TP S NT D++S
Sbjct: 112 YVGFNFLATPPPTSFNTIFDEYS 134
>08_02_1388 +
26649874-26649905,26650243-26650365,26650980-26651013,
26651792-26651893,26652174-26652241,26652518-26652571,
26653139-26653211,26653428-26653537,26653615-26653719,
26653842-26653941,26653979-26654088,26656234-26656306,
26656429-26656484,26656576-26656702
Length = 388
Score = 50.0 bits (114), Expect = 4e-06
Identities = 24/70 (34%), Positives = 41/70 (58%)
Frame = +2
Query: 263 KFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAILK 442
+ + S + AS+VY L VDKEL+ V RE + L + F++++ + LR + +A +
Sbjct: 307 EIDYGSEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFSAFVD 366
Query: 443 NILLITKTVE 472
+L+TK VE
Sbjct: 367 LTVLVTKLVE 376
>02_02_0595 +
11968298-11968329,11969405-11969438,11970216-11970317,
11970598-11970665,11970942-11970995,11971563-11971635,
11971852-11971961,11972039-11972143,11972266-11972365,
11972403-11972512,11974664-11974736,11974859-11974914,
11975006-11975132
Length = 347
Score = 50.0 bits (114), Expect = 4e-06
Identities = 24/70 (34%), Positives = 41/70 (58%)
Frame = +2
Query: 263 KFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAILK 442
+ + S + AS+VY L VDKEL+ V RE + L + F++++ + LR + +A +
Sbjct: 266 EIDYGSEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFSAFVD 325
Query: 443 NILLITKTVE 472
+L+TK VE
Sbjct: 326 LTVLVTKLVE 335
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 49.2 bits (112), Expect = 6e-06
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 512 PAPTPSRS---LYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQF 682
P PSR YGF + + + WA+ P+ +L + + YYP ++W+ A+P
Sbjct: 757 PTADPSRGSSEAYGFVGSIAAVAAAAAYLAWAYLPEPWLRFLGVTYYPARHWALAMP-SL 815
Query: 683 LVALTVFAFLIYPSINMILTP 745
L+ ++Y + N +L P
Sbjct: 816 LLEAAAQGMVLYMASNFLLAP 836
>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
Length = 748
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +2
Query: 224 MNTKCTEKTAITLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKS 370
+N K + TA + FT SL Y+V + KEL+ REF LKS
Sbjct: 82 LNQKLIDATA---RLEFTHKQCGSLQYEVRILQKELEIRNKEREFDLKS 127
>08_02_1349 - 26309330-26309881,26309902-26310534
Length = 394
Score = 29.9 bits (64), Expect = 4.2
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 809 KTFSSNGCICQDSNNXEYKSYVDSKENAVPHL 904
KT GC+C SN Y+D ENAVP L
Sbjct: 348 KTVDFYGCVCV-SNEDFVARYIDHHENAVPGL 378
>08_01_0059 - 394001-394708
Length = 235
Score = 29.9 bits (64), Expect = 4.2
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = -2
Query: 1207 PPPPPXXKKXXXXXXXXXXXXXXPPXXXXXXPPXXGXPXPXXXXXXXXPXXXPPP 1043
PPPPP PP PP P P P PPP
Sbjct: 3 PPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPP 57
>11_06_0257 + 21746643-21748091
Length = 482
Score = 28.7 bits (61), Expect = 9.7
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 641 YPQKYWSTALPIQFLVALTVFAFLIYPSINMILTPHIDSPNT--FQDKFSDFTGKANDKT 814
+ ++ WST+LP ++L V P ++ TP + + F+ S + ++D+
Sbjct: 282 FDERTWSTSLPSRYLE--DVHLPCAQPCRYLVNTPSGELLHVWRFRQWVSSYDSSSDDQD 339
Query: 815 FSSNGCICQDSNNXEYKSYVDSKENA 892
SSN +D ++ Y S + ++++
Sbjct: 340 DSSNDSSSEDQDDDSYDSSSEDQDDS 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,965,971
Number of Sequences: 37544
Number of extensions: 457554
Number of successful extensions: 1097
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3701409336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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