Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B23
         (1208 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical pr...    64   3e-10
Z34801-5|CAA84326.1|  123|Caenorhabditis elegans Hypothetical pr...    37   0.033
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   2.2  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   2.2  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   2.2  
Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical pr...    30   3.8  
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    30   3.8  
AF016415-9|AAW88416.1|  297|Caenorhabditis elegans Serpentine re...    29   8.7  

>Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2a protein.
          Length = 890

 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 28/71 (39%), Positives = 39/71 (54%)
 Frame = +2

Query: 491 PAMPEHTPAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTAL 670
           P+   H P P P+R +YGF LY+ S T   ++ IWA TP   L+   I Y P K W+ A+
Sbjct: 19  PSEEIHLPGPHPARGIYGFALYIVSWTLFVIYLIWAITPVPILYRLGITYIPSKLWALAI 78

Query: 671 PIQFLVALTVF 703
            I F  A  ++
Sbjct: 79  GIFFPTAACLY 89


>Z34801-5|CAA84326.1|  123|Caenorhabditis elegans Hypothetical
           protein F59A2.5 protein.
          Length = 123

 Score = 36.7 bits (81), Expect = 0.033
 Identities = 21/72 (29%), Positives = 38/72 (52%)
 Frame = +2

Query: 257 TLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAI 436
           +++ S  + + A  V DV+ +DKE + SG  RE   +   + I+ +S D K L  ++   
Sbjct: 29  SVRLSVGTEEAARTVADVIKIDKEPRRSGARREVCSEGEFVVIKIESKDPKSLSKSIANA 88

Query: 437 LKNILLITKTVE 472
           +  I L  KT++
Sbjct: 89  VDMIDLSVKTIK 100


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = -1

Query: 1205 PPPPXXXKXXXXXXXXXXXXXXXPXXXXPXXPXXGXPXPXXXXXXPXPPXGXPPXP 1038
            PPPP   K               P    P  P  G P P      P PP G  P P
Sbjct: 237  PPPPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = -1

Query: 1205 PPPPXXXKXXXXXXXXXXXXXXXPXXXXPXXPXXGXPXPXXXXXXPXPPXGXPPXP 1038
            PPPP   K               P    P  P  G P P      P PP G  P P
Sbjct: 258  PPPPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = -1

Query: 1205 PPPPXXXKXXXXXXXXXXXXXXXPXXXXPXXPXXGXPXPXXXXXXPXPPXGXPPXP 1038
            PPPP   K               P    P  P  G P P      P PP G  P P
Sbjct: 243  PPPPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297


>Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical
           protein F28C12.2 protein.
          Length = 340

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 545 FFLYLFSKTT-LTMFCIWAFTPDSFL-HYFNIYYYPQKYWSTALPIQFLVALTVFAFLI 715
           F LYL+  T   + + +++ T D  + HY + YY+  +Y+     +   + LT+F+F I
Sbjct: 110 FELYLYYPTGYFSTYSVFSLTFDRLISHYKSRYYHMHQYFIATSLLVLQLLLTMFSFYI 168


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 528 QDLYMASFCTYLAKQP*QCFVFGLLHQIVFYIILTFITIHKN 653
           +++++  FC Y    P  C VFG      FY   +F TIHK+
Sbjct: 140 EEIWLFKFCDYKLDIPSNCKVFGCAVNSCFY---SFWTIHKS 178


>AF016415-9|AAW88416.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 36 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +2

Query: 539 YGFFLYLFSKTTLTMFCIWAF----TPDSFLHYFNIYYYPQKYWSTALPIQFLVALTV 700
           Y F L +F  T L ++ ++       PD  L Y ++  Y    WS     + ++ALT+
Sbjct: 46  YRFTLDIFFGTCLLLYIVFILLSMEAPDFMLQYRSLIVYLALPWSNVAACRSIIALTI 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,939,316
Number of Sequences: 27780
Number of extensions: 442562
Number of successful extensions: 1187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3328592102
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)