Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B20
(1298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 113 4e-25
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 105 8e-23
03_06_0191 - 32228642-32228949,32229028-32230567 33 0.65
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.65
01_03_0196 - 13696056-13697448,13697676-13697713 30 3.5
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 30 4.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 6.1
01_03_0224 + 13940419-13941786 29 6.1
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 29 8.0
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 113 bits (271), Expect = 4e-25
Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 1/233 (0%)
Frame = +3
Query: 204 GNYRIVQQEL-KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVA 380
G+Y++V E+ +A LQ +K L YL D +SAIV+ + ++ SN + ++A
Sbjct: 51 GSYQLVISEIDSSAATSLQAVKLLALYLSGD-KESAIVS-LKEWLSDSAVGSNPVLRLIA 108
Query: 381 ATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQ 560
I+ HE +Y ALK H+ +L+L A +Q + M+R D A KQLK++Q I++D TLTQ
Sbjct: 109 GIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQ 168
Query: 561 LAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXXMWEEAEQQLTDA 740
LA AWL++ GG I++A+ + +E ++EAE L +A
Sbjct: 169 LANAWLDIAVGGSKIREAYLIFQDFAE-KYPMTGMVLNGKAVCCMHMGSFDEAETLLLEA 227
Query: 741 ASRAPQXXXXXXXXXXXXXXXXKPPEVSARYLAQLLDSHPQHPFVKEYKAKTD 899
++ + KP S+RYL+QL SHP H VK + D
Sbjct: 228 LNKDAKDPETLANLIVCNLHLGKP---SSRYLSQLKLSHPDHVLVKRAVSAED 277
Score = 43.6 bits (98), Expect = 3e-04
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +2
Query: 62 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAXLYRSYIAQG 205
D LF+++N FY+G YQ AIN + V A +RDA ++RSY+A G
Sbjct: 5 DLLFNLRNLFYLGAYQAAINNS-DVPGLDADAAAERDAIVFRSYVALG 51
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 105 bits (252), Expect = 8e-23
Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 2/234 (0%)
Frame = +3
Query: 204 GNYRIVQQELKT-ADPMLQPLKSLVDYLLPDAN-KSAIVADIDARVAKGTELSNEIFLIV 377
G++++V E+ A LQ ++ L YL A K + + ++ +A SN I +V
Sbjct: 58 GSHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLV 117
Query: 378 AATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLT 557
A T+ HE +Y ALK ++ ++EL A +Q L M+R D A KQL+++Q +++D TLT
Sbjct: 118 AGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLT 177
Query: 558 QLAQAWLNLIQGGPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXXMWEEAEQQLTD 737
QLA AW++L+ GG IQ+AH +LSE +E+AE L +
Sbjct: 178 QLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGN-FEDAEGLLLE 236
Query: 738 AASRAPQXXXXXXXXXXXXXXXXKPPEVSARYLAQLLDSHPQHPFVKEYKAKTD 899
+ ++ + K ++RYL QL +HP H VK + D
Sbjct: 237 SLNKDAKDAETLANLVVCSLNLGKS---ASRYLNQLKLAHPDHMLVKRMSSAED 287
Score = 46.0 bits (104), Expect = 7e-05
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = +2
Query: 62 DELFDVKNAFYVGNYQQAINEAQSV---SPSTPLVALQRDAXLYRSYIAQG 205
D LF ++N+FYVG YQ I Q++ + +P +RD+ LYRSYIA G
Sbjct: 8 DHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIG 58
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 32.7 bits (71), Expect = 0.65
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = +3
Query: 234 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 413
K P + S+++ L + V V + TE+++ + + + + N++
Sbjct: 459 KGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALC-KQGNFK 517
Query: 414 AALKILH----NAESLELRAFTLQCLLAMNRPDLARKQLKLLQ 530
AL +L N ES+ L+CL+ + DLA + +K ++
Sbjct: 518 GALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIR 560
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.65
Identities = 19/72 (26%), Positives = 20/72 (27%)
Frame = -2
Query: 1294 PPXXXVXXKXPPPPXPXXKKXXXXXFXPXXXPXXXXPXXPXXFFXPXXXXPXXXXXFXXG 1115
PP PPPP P P P P P P P G
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGG 376
Query: 1114 PXXPPXRGXXPR 1079
P PP +G R
Sbjct: 377 PPPPPPKGGASR 388
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 30.3 bits (65), Expect = 3.5
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +3
Query: 393 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 521
YH + ++++K LH+ + L + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 29.9 bits (64), Expect = 4.6
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -1
Query: 863 LGVAVEQLGQVSGRHLRWFPEMRRGERK--AEQQVGVLWGAGRCVCQLLFSLFPHTSGSC 690
+ + +G V W P M+ K + +V + G+ + ++ F+ F GSC
Sbjct: 657 ISMVKRSIGSVCADVSEWQPSMKNWHTKDYEKAKVHLQCDNGQKITEIKFASFGTPQGSC 716
Query: 689 SPSTEGG 669
TEGG
Sbjct: 717 GSYTEGG 723
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 6.1
Identities = 15/64 (23%), Positives = 18/64 (28%)
Frame = -2
Query: 1291 PXXXVXXKXPPPPXPXXKKXXXXXFXPXXXPXXXXPXXPXXFFXPXXXXPXXXXXFXXGP 1112
P + PPPP P F P P P ++ P P P
Sbjct: 48 PPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPP 107
Query: 1111 XXPP 1100
PP
Sbjct: 108 PPPP 111
>01_03_0224 + 13940419-13941786
Length = 455
Score = 29.5 bits (63), Expect = 6.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 465 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 599
T +CL+ RP LAR L ++ D+ G ++ W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 29.1 bits (62), Expect = 8.0
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 839 GQVSGRHLRWFPEMRRGERKAEQQVGVLWGAGRCVCQLLFSLFPHTSGSCSPST 678
G R W PE R ER+ ++ G W R + Q + +L S CSPST
Sbjct: 100 GMAGTREGSWTPERRGEERRRRREEG-SWFLARSL-QSVGTLHVGFSSRCSPST 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,586,467
Number of Sequences: 37544
Number of extensions: 624008
Number of successful extensions: 1989
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1903
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4050598896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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