Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B20
(1298 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical pr... 78 1e-14
U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical pr... 33 0.58
Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical pr... 31 2.3
AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical ... 30 4.1
U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical p... 29 7.2
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 29 9.5
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 29 9.5
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 29 9.5
>Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical
protein F45G2.4 protein.
Length = 292
Score = 78.2 bits (184), Expect = 1e-14
Identities = 59/223 (26%), Positives = 98/223 (43%)
Frame = +3
Query: 234 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 413
K+AD L ++ ++ A K I+A++ VA + +EI ++AATI D +
Sbjct: 64 KSAD--LAAVRRYAEFRNNPAAKKKILAEVQEEVAS-RNIKSEIAAVLAATILNEADLSQ 120
Query: 414 AALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQG 593
A + + E LE RA + L+ MN+ LA ++K + I++D TL+QLA A +
Sbjct: 121 DAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGA 180
Query: 594 GPGIQDAHYSVMELSEXXXXXXXXXXXXXXXXXXXXXMWEEAEQQLTDAASRAPQXXXXX 773
++DA Y E+S+ + AE+ L A R +
Sbjct: 181 SGKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILTQD-YAAAEELLESALERDNKDADVL 239
Query: 774 XXXXXXXXXXXKPPEVSARYLAQLLDSHPQHPFVKEYKAKTDE 902
K +V R+++QL HP HP+V ++ K E
Sbjct: 240 INSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVIDFNEKEAE 282
Score = 50.0 bits (114), Expect = 4e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2
Query: 62 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAXLYRSYIAQG 205
D+LF ++N F++G+YQ I EA S ++D LYRSYIAQG
Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQG 50
>U61953-6|AAO91706.1| 341|Caenorhabditis elegans Hypothetical
protein R08C7.9 protein.
Length = 341
Score = 32.7 bits (71), Expect = 0.58
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 843 LLDSHPQHPFVKEYKAKTDEXNVWPRSTXPQWLVNAWCICNTNLCNVXICVL 998
L+ P P +E+ +T E WP+ Q+L +A +CN +C + I +L
Sbjct: 102 LVSQAPNDPGKREFTLRTREGKTWPKFGARQFLDHALEVCN-EVCIIRITLL 152
>Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical
protein C07E3.8 protein.
Length = 294
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 399 EDNYEAALKILHNAESLELRAFTLQCLLAMNR 494
E +E + H+ ESLE+ +FT+ CLL NR
Sbjct: 117 EGVFETPFEKPHHFESLEITSFTIDCLLYGNR 148
>AL021479-1|CAA16321.2| 346|Caenorhabditis elegans Hypothetical
protein Y22F5A.2 protein.
Length = 346
Score = 29.9 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 906 NVWPRSTXPQWLVNAWCICNTNLCNVXICVLKR 1004
N + ST Q + WCI NTN C + I +LKR
Sbjct: 86 NFFGISTHYQMVFTLWCIGNTNTC-IFISLLKR 117
>U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical
protein F08D12.1 protein.
Length = 694
Score = 29.1 bits (62), Expect = 7.2
Identities = 30/104 (28%), Positives = 51/104 (49%)
Frame = +3
Query: 183 IVPTLPRGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNE 362
I P +P +++I Q +L + L + + LL + + A ++ VAK S +
Sbjct: 334 IPPKIPNFSFQIDQTKLTRRQRLTLMLNNALVLLLSNQREPCKRA-LEELVAKFGS-SKD 391
Query: 363 IFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNR 494
+ LI AT+++ + EAALK+L ++ LE L LL R
Sbjct: 392 VALI-EATLHFKMGDAEAALKVLAGSD-LEQSLARLHVLLNAGR 433
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 28.7 bits (61), Expect = 9.5
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 207 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 377
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421
Query: 378 AATIYYHEDNYEAALKILHNAESLEL 455
A +Y +E YE+ALKIL + + ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 28.7 bits (61), Expect = 9.5
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 207 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 377
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421
Query: 378 AATIYYHEDNYEAALKILHNAESLEL 455
A +Y +E YE+ALKIL + + ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 28.7 bits (61), Expect = 9.5
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 207 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 377
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 418 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 469
Query: 378 AATIYYHEDNYEAALKILHNAESLEL 455
A +Y +E YE+ALKIL + + ++
Sbjct: 470 LAHLYLYERKYESALKILMSCQDFQI 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,073,591
Number of Sequences: 27780
Number of extensions: 488941
Number of successful extensions: 1446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3621523944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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