Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B19
(1307 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 91 3e-19
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 50 7e-07
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 30 0.61
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 5.7
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 27 7.6
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 10.0
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 10.0
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 91.1 bits (216), Expect = 3e-19
Identities = 71/267 (26%), Positives = 120/267 (44%), Gaps = 6/267 (2%)
Frame = +2
Query: 203 KFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQWASWSDXEL 370
KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+ S+++ EL
Sbjct: 46 KFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQYCSFTNSEL 104
Query: 371 LPASCAWVFPYLGIMQFXKQNVERAKSDXXXXXXXXXXXXXTRTFLVTERITLADVIVFS 550
A + P + + +Q + A++ ++T+LV R+TLAD+
Sbjct: 105 PGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTC 164
Query: 551 TLLHAFQHVLXPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYDPKKYQELAG 730
L +VL S + ++ R++ T+ HQ ++ A+ L P + +E A
Sbjct: 165 FLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPLKFIDQPLPIIKAENKEAAP 224
Query: 731 AXNXXXXXXXXXXXXXXXXXXXXXVVPDLXXXXLEKP-KESKDPFXSMPKGTFNMDDFXR 907
A + E P K K P S P G+F+++++ R
Sbjct: 225 AKKAEKKKDEKK--------------KNAPKPQAEAPAKPPKHPLASAPNGSFDIEEYKR 270
Query: 908 VYSN-XXXXXSIPYFWXXFDPXXYSIW 985
VYSN ++P+F+ FDP YS+W
Sbjct: 271 VYSNQDTRSGALPWFFEHFDPENYSVW 297
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 50.0 bits (114), Expect = 7e-07
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Frame = +2
Query: 203 KFPAGKVPAFESADGKVLLTESNAIAYYVAN------ESLRGGDLATQARVWQWASWSDX 364
KFP K+P F ADG L + Y+ E L + +A + +W + +
Sbjct: 46 KFPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINF 105
Query: 365 ELL-PASCA-WVFPYLGIMQFXKQNVERAKSDXXXXXXXXXXXXXTRTFLVTERITLADV 538
+++ P + WV + G + + ++ + + + RT+LV +R TLAD+
Sbjct: 106 DIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTLADL 165
Query: 539 IVFSTLLHAFQHVLXPSVRSSLINVQRWFLTVAHQPQV 652
S L F ++ R L ++ R+++T+ HQ ++
Sbjct: 166 FFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAKL 203
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 30.3 bits (65), Expect = 0.61
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 500 TFLVTER-ITLADVIVFSTLLHAFQHVLXPSVRSSLINVQRWFLTVAHQPQVSAVVGSLT 676
TF+ + I++AD+ V++ + H++ L L NV RWF + HQ V S++
Sbjct: 136 TFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESVMEAANSMS 194
Query: 677 LCAAPPTYDPKKYQ 718
+ A + K Q
Sbjct: 195 MKLANIDLNAPKIQ 208
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 315 IWLPKPVSGSGHHGLTXNYCL-LPALGSSLTLV 410
+W+P PV SG T C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 255 STFPSALSNAGTFPAGNFFKKXSDL 181
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 345 GHHGLTXNYCLLPALGSSLTLV--SCNSXN-RMLNVQSL 452
GH L + C P++GSS L+ +C N R+ V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 266 SNAIAYYVANESLRGGDLATQARVWQWAS 352
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,414,024
Number of Sequences: 5004
Number of extensions: 60499
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 715384080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -