Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B18
         (1315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    36   0.012
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    35   0.022
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    29   1.4  

>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = +2

Query: 485 GYCEMCNADYADAALHRRSPHHLAFVRDHTNFLALDSL 598
           GYCE C   Y D   H    HH  F     NF  LD L
Sbjct: 426 GYCENCCERYKDLERHLGGKHHRRFAEKDENFQGLDDL 463


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 485 GYCEMCNADYADAALHRRSPHHLAFVRDHTNFLALDSLIS 604
           GYCE C   + +   H RS  H  F  ++ NF  LD L +
Sbjct: 497 GYCENCREKFDNFESHIRSSRHRRFAENNDNFKDLDELFA 536


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 698 LPKRRSKRSQSPDSTMNGSQSPKRNGGLXDEKKHNTRCSKRTETQEDRHYYKVVSTKLXS 877
           LPK    +SQSP +T   +   K NG   +  ++    S+R+ T++D    K + + L  
Sbjct: 28  LPKASPSQSQSPVNTSLHNGDGKDNGVATEPVENKQILSERSVTRDDYEKGKTIVSSLAL 87

Query: 878 S 880
           S
Sbjct: 88  S 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,664,430
Number of Sequences: 5004
Number of extensions: 64002
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)