Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B18
         (1315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    35   0.11 
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    33   0.45 
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...    31   1.8  
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...    31   1.8  
AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    29   7.3  

>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 35.1 bits (77), Expect = 0.11
 Identities = 30/94 (31%), Positives = 40/94 (42%)
 Frame = +2

Query: 635 KATPINGERRSLRKMCNGDIELPKRRSKRSQSPDSTMNGSQSPKRNGGLXDEKKHNTRCS 814
           +++P+     S RK  +    L KRR  RS+S       S+SP R        +H +R  
Sbjct: 273 RSSPLRAAEISRRKSTSHSTSLSKRRYLRSRSRSL----SKSPARR-----RSRHLSRSG 323

Query: 815 KRTETQEDRHYYKVVSTKLXSSGGFQTKRKDSPP 916
            RT  Q  RH  +  ST    SG     R  SPP
Sbjct: 324 SRTPAQ--RHSRRSESTSRRRSGRHSRSRSRSPP 355


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +2

Query: 221 PMPCCS---GRLRPTAPTCC-SPCTRLWRPVFKEF 313
           P PCC    G   P  P CC  PC R  RP ++E+
Sbjct: 78  PKPCCQPAFGPCCPATPNCCPKPCCRGRRPEYEEY 112


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/105 (23%), Positives = 45/105 (42%)
 Frame = +2

Query: 575 NFLALDSLISSGADVTTFLDKATPINGERRSLRKMCNGDIELPKRRSKRSQSPDSTMNGS 754
           NFLA +++  SGAD+T    +A  +     ++R+    +I   K R  RS   +  M   
Sbjct: 678 NFLAKNTVGFSGADLTEICQRACKL-----AIRESIEREIRQEKERQDRSARGEELMEDE 732

Query: 755 QSPKRNGGLXDEKKHNTRCSKRTETQEDRHYYKVVSTKLXSSGGF 889
            +           +   + ++R+ T  D   Y++ +  L  S GF
Sbjct: 733 LADPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGF 777


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 25/105 (23%), Positives = 45/105 (42%)
 Frame = +2

Query: 575 NFLALDSLISSGADVTTFLDKATPINGERRSLRKMCNGDIELPKRRSKRSQSPDSTMNGS 754
           NFLA +++  SGAD+T    +A  +     ++R+    +I   K R  RS   +  M   
Sbjct: 678 NFLAKNTVGFSGADLTEICQRACKL-----AIRESIEREIRQEKERQDRSARGEELMEDE 732

Query: 755 QSPKRNGGLXDEKKHNTRCSKRTETQEDRHYYKVVSTKLXSSGGF 889
            +           +   + ++R+ T  D   Y++ +  L  S GF
Sbjct: 733 LADPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGF 777


>AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical
           protein Y52E8A.4 protein.
          Length = 433

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +3

Query: 612 QMSQHSLIKLHL*MEKEDH*ERCVMVILNFPNGDPRGPNHQIQP*MEAKVLKGM 773
           +  QH+LI   L +    H   CVM+ L FPN  P G   +  P   A VL  M
Sbjct: 293 KFGQHTLILCALIL----HIFLCVMISLTFPNDAPLGHTDKNGPVFGASVLSAM 342


>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = +2

Query: 509 DYADAALHRRSPHHLAFVRDHTNFLALDSLISSGADVTTFLDKATPINGERRSLRKMCNG 688
           D+      +  P ++   R   NF+  +    SG+  TT + K +   G+R   ++    
Sbjct: 442 DHLSPTTVQNHPFNVVEPRPQQNFVEKEK---SGSQSTTRMSKNS--KGDRNEGKRELTF 496

Query: 689 DIELPKRRSKRSQSPDSTMNGSQSP 763
           D  L K R ++S+  +  +NG+ SP
Sbjct: 497 DERLHKARMQKSRVENEGVNGATSP 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,628,302
Number of Sequences: 27780
Number of extensions: 376150
Number of successful extensions: 1108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3673557334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)