Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B17
(1276 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031633-11|CAA21025.1| 231|Caenorhabditis elegans Hypothetical... 245 6e-65
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 30 3.1
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 30 3.1
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 30 3.1
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 30 3.1
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 30 3.1
Z81531-2|CAB04316.1| 422|Caenorhabditis elegans Hypothetical pr... 30 4.0
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 30 4.0
AF273800-1|AAG15149.1| 272|Caenorhabditis elegans nuclear recep... 30 4.0
AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical ... 29 7.0
AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical ... 29 9.3
>AL031633-11|CAA21025.1| 231|Caenorhabditis elegans Hypothetical
protein Y39A1A.14 protein.
Length = 231
Score = 245 bits (599), Expect = 6e-65
Identities = 118/230 (51%), Positives = 160/230 (69%), Gaps = 2/230 (0%)
Frame = +2
Query: 236 VSKDDDFEFDPIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRK 415
+S + D P K + T + + +K L V+LE LE+ K G + +L+ D H + LRK
Sbjct: 1 MSHEYDTVAPPNAKRMKTDNQLEDKKILYVVLEGCSLETAKVGGEYAILSSDKHANFLRK 60
Query: 416 NDRDPGSCRPDITHQSLLMLMDSPLNRAGLLQVYIHTEKNVLIEINPQTRIPRTFKRFAG 595
+DP RPDI HQ LL L+DSPLNRAG L+V+ T KNVL++++PQ RIPRTF RF G
Sbjct: 61 QKKDPADYRPDILHQCLLNLLDSPLNRAGKLRVFFRTSKNVLVDVSPQCRIPRTFDRFCG 120
Query: 596 LMVQLLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVKKITMSFSSKIVQNCRDLV-PK-D 769
LMVQLLHK +IRA++ KL+ V+KNPV++HLPVG +K+ MSF+ + LV P+ D
Sbjct: 121 LMVQLLHKLSIRAAETTQKLMSVVKNPVSNHLPVGSRKMLMSFNVPELTMANKLVAPETD 180
Query: 770 EPIVMVIGAMAHGKVEVDYSEDVISISNYPLSAALTCAKLGSAFEEVWGV 919
EP+V++IG +A GK+ VDY++ ISNYPLSAALTCAK+ S EE+WG+
Sbjct: 181 EPLVLIIGGIARGKIVVDYNDSETKISNYPLSAALTCAKVTSGLEEIWGI 230
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 30.3 bits (65), Expect = 3.1
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +2
Query: 281 LVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDI-TH 457
+VTS + ++ + I E +L S K+ FE+++ H+ KND D D+ +
Sbjct: 131 VVTSEMAGNDRFVTAIREELELFSNKSTKLFEMIH---FSHMNTKNDTDVDLKLADVKKN 187
Query: 458 QSLLMLMDSPLNRAGLLQVYIHTEKNVLI 544
Q+ ++L+ + +AG ++ H EK +I
Sbjct: 188 QAKIILLYANAAQAG--TIFSHAEKMDMI 214
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 30.3 bits (65), Expect = 3.1
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +2
Query: 281 LVTSHIKKQEKRLIVILENAQLESVKNGNSFELLNCDDHGHILRKNDRDPGSCRPDI-TH 457
+VTS + ++ + I E +L S K+ FE+++ H+ KND D D+ +
Sbjct: 131 VVTSEMAGNDRFVTAIREELELFSNKSTKLFEMIH---FSHMNTKNDTDVDLKLADVKKN 187
Query: 458 QSLLMLMDSPLNRAGLLQVYIHTEKNVLI 544
Q+ ++L+ + +AG ++ H EK +I
Sbjct: 188 QAKIILLYANAAQAG--TIFSHAEKMDMI 214
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 30.3 bits (65), Expect = 3.1
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = +2
Query: 527 EKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVK 706
EK+ +I I+ +T I + K Q +H FAI ASD + + N L + V+
Sbjct: 779 EKSSVISIDAKTGIVKLLKSL-DREDQDVHTFAIIASDEGFPMRVSVTN-----LTISVE 832
Query: 707 KITMSFSSKIVQNCRDLVPKDEPIVMVIGAMA 802
+ + +VQ+ R +P+D P + MA
Sbjct: 833 DVNDNPPKCVVQHSRARIPEDLPHGAFVSCMA 864
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 30.3 bits (65), Expect = 3.1
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = +2
Query: 527 EKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVK 706
EK+ +I I+ +T I + K Q +H FAI ASD + + N L + V+
Sbjct: 779 EKSSVISIDAKTGIVKLLKSL-DREDQDVHTFAIIASDEGFPMRVSVTN-----LTISVE 832
Query: 707 KITMSFSSKIVQNCRDLVPKDEPIVMVIGAMA 802
+ + +VQ+ R +P+D P + MA
Sbjct: 833 DVNDNPPKCVVQHSRARIPEDLPHGAFVSCMA 864
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 30.3 bits (65), Expect = 3.1
Identities = 26/92 (28%), Positives = 43/92 (46%)
Frame = +2
Query: 527 EKNVLIEINPQTRIPRTFKRFAGLMVQLLHKFAIRASDGPMKLLKVIKNPVTSHLPVGVK 706
EK+ +I I+ +T I + K Q +H FAI ASD + + N L + V+
Sbjct: 779 EKSSVISIDAKTGIVKLLKSL-DREDQDVHTFAIIASDEGFPMRVSVTN-----LTISVE 832
Query: 707 KITMSFSSKIVQNCRDLVPKDEPIVMVIGAMA 802
+ + +VQ+ R +P+D P + MA
Sbjct: 833 DVNDNPPKCVVQHSRARIPEDLPHGAFVSCMA 864
>Z81531-2|CAB04316.1| 422|Caenorhabditis elegans Hypothetical
protein F36D3.2 protein.
Length = 422
Score = 29.9 bits (64), Expect = 4.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +3
Query: 132 VFETKYFPDDGRSIXL*ISHNIARCILKWVKKENW----FLKMMILNLIRF 272
+ ET +FPDD + L + C+ K K++W F K+ L+L F
Sbjct: 154 ILETHFFPDDDVIVELNPLEKMTFCLRKLRSKQSWNPNFFTKINFLDLFEF 204
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical
protein ZC373.4 protein.
Length = 1211
Score = 29.9 bits (64), Expect = 4.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 221 KKRKLVSKDDDFEFDPIPKHLVTSHIKKQEKRLIVILENAQLESVKNGNS 370
KK+KLV D D P P+ + E L + LE V+NGNS
Sbjct: 452 KKKKLVETDGDAGLRPPPELMTKRASTGGESLLAAVKVLKNLEVVENGNS 501
>AF273800-1|AAG15149.1| 272|Caenorhabditis elegans nuclear receptor
NHR-54 protein.
Length = 272
Score = 29.9 bits (64), Expect = 4.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +3
Query: 132 VFETKYFPDDGRSIXL*ISHNIARCILKWVKKENW----FLKMMILNLIRF 272
+ ET +FPDD + L + C+ K K++W F K+ L+L F
Sbjct: 4 ILETHFFPDDDVIVELNPLEKMTFCLRKLRSKQSWNPNFFTKINFLDLFEF 54
>AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical
protein H42K12.3 protein.
Length = 522
Score = 29.1 bits (62), Expect = 7.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 737 VQNCRDLVPKDEPIVMVIGAMAHGKVEVDYSEDVISISNYPLSAALTCAKLGSAFEEVWG 916
VQNC +++P P M V VD ++ I++ N + +A + L E+VWG
Sbjct: 419 VQNCPEIIPTSTP---QNNEMIRSVVSVDGDDEPIAVDNISVDSA-PSSILPVLNEQVWG 474
>AF047652-5|AAC04391.2| 449|Caenorhabditis elegans Hypothetical
protein C34H4.2 protein.
Length = 449
Score = 28.7 bits (61), Expect = 9.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 344 LESVKNGNSFELLNCDDHGHILRKNDRDPGSCR 442
L+S KNG +++ N +D ++ +D DP + R
Sbjct: 26 LKSYKNGTVYQVANLEDSANLYVASDDDPSNLR 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,873,237
Number of Sequences: 27780
Number of extensions: 453477
Number of successful extensions: 1161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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