Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B14
(1399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 36 0.018
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 34 0.041
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 29 1.2
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo... 29 1.2
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 29 1.5
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 27 8.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 8.2
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 27 8.2
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 35.5 bits (78), Expect = 0.018
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 5/215 (2%)
Frame = -2
Query: 810 YPSLKTRTMMTNSLAYFQILTILIQTKDSSAYFQILTIPILMKDSLVCLQILIAQILMRD 631
+ S T + + S + TIL S++ I + I+ S + L I+ I +
Sbjct: 603 FSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSI-LSSSISTIPISS 661
Query: 630 SSAYFQTLIIPI--LMKDSSAYFQILTIPILMKDSSVYFQS---LMTRTMMKNNLVYFRI 466
S + + + +IP + SS+ + + P+ SS S + T + +N+ + +
Sbjct: 662 SLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSL 721
Query: 465 LTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYFRNCSSTTVSNYDSQ 286
L M SSA S+ + T++ + T+L + SSA SSTTVSN S
Sbjct: 722 S--LTAMSSSSAIPTSVNSSTLITASSSN----TLLSSITSSSAIV---SSTTVSNISSN 772
Query: 285 NCSSTTVSNYDSHNYSKMAYNLTLSHNSFHRMRNS 181
S+T S N S +A +L LS +S + S
Sbjct: 773 LPSATASSQSQLTNSSTLATSLYLSSSSSRTISTS 807
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 34.3 bits (75), Expect = 0.041
Identities = 26/113 (23%), Positives = 51/113 (45%)
Frame = -2
Query: 759 QILTILIQTKDSSAYFQILTIPILMKDSLVCLQILIAQILMRDSSAYFQTLIIPILMKDS 580
QI+ ++ T + I+ P+LM + L+ ++ R SS +FQTL + ++
Sbjct: 96 QIVFAILVTILNKQALNIINAPLLMLSFQMAFTSLMVKMYWRFSSVHFQTLRLASAIQLK 155
Query: 579 SAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFP 421
F + + I+ K + F + + + L+ F IL + +K + FP
Sbjct: 156 KFIF-VKILGIVSKTYCLAFVPVSFYQISRGLLLPFTILLSFVLLKQKTRLFP 207
Score = 30.3 bits (65), Expect = 0.66
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = -2
Query: 672 VCLQILIAQILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVYFQSL-MTRTM 496
V QI+ A ++ + + P+LM F L + + + SSV+FQ+L + +
Sbjct: 93 VSSQIVFAILVTILNKQALNIINAPLLMLSFQMAFTSLMVKMYWRFSSVHFQTLRLASAI 152
Query: 495 MKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYFRILTILIQMKDSSAYF 328
++ +IL I+ K F + + R L+ F IL + +K + F
Sbjct: 153 QLKKFIFVKILGIV--SKTYCLAFVPVSFYQISRGLLLPFTILLSFVLLKQKTRLF 206
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 29.5 bits (63), Expect = 1.2
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Frame = -2
Query: 762 FQILTILIQTKDSSAYFQILTIPILMKD---SLVCLQILIAQILMR----DSSAYFQTLI 604
F + +L + D SA F + I + + D +V LQ ++ + R + + Q++I
Sbjct: 720 FILHQLLDKESDDSACFLVGPILLELADHASQMVDLQSILLSCIKRLAIAEQPRFIQSII 779
Query: 603 I---PILMKDSSAYFQILTIPILMKDSSVYFQSLMTRTMMKNNLVYF----RILTILIQM 445
+++KDS LT +L + F+ LM T+ +N VYF I I I M
Sbjct: 780 YVFAKLIVKDSLGMMHFLTSSLLNEQGLTAFEVLM--TVWCDNFVYFSNFKNISIICIAM 837
Query: 444 KDSSAYFPSLMTRTMMRNNLV 382
++ L+ ++ L+
Sbjct: 838 TKIYSFDSPLLDSVQVKGELI 858
>SPAC1399.04c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 220
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -2
Query: 645 ILMRDSSAYFQTLIIPILMKDSSAYFQILTIPILMKDSSVY--FQSLMTRTMMKNNLVYF 472
++ RD + + L+ L KD+ +L P+L +SV Q+L+ + + + N+V+
Sbjct: 110 LVQRDETTFEAKLMFCKLPKDAQDRLVLLLDPLLATGNSVILAIQTLINKGIPEENIVFV 169
Query: 471 RILTILIQMKDSSAYFPSL 415
++ + + A FP L
Sbjct: 170 NLIACNEGITNVFAKFPKL 188
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 703 QDLEVSRAILRLDQDCQDLEVSQAIRHHGSGLQARVVNLVILHQDLGCTDQEANQATLHQ 882
++ E++ + ++ Q+C D + ++HH ARV V + G ++ + H
Sbjct: 142 EEEEITDPLEKMTQECMDAPDCKEVKHHFEECTARVTKKV----EQGDKSEDCIEEFFHL 197
Query: 883 Y---LDCQDLEVSQVI 921
Y DC D +V +V+
Sbjct: 198 YHCARDCADPKVFKVL 213
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 270 TVSNYDSHNYSKMAYNLTLSHNSFHRMRNSFHYY 169
++SNY H Y + N++L S R++ SFH Y
Sbjct: 217 SLSNYQQHLYQVLTQNVSLRFCS--RLQCSFHKY 248
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 360 LIQMKDSSAYFRNCSSTTVSNYDSQNCSST-TVSNYDSHNYSKMAYNLTLSHNS 202
+I SS+ +S+T+S+ S + S T T S S + S +++ TLS +S
Sbjct: 272 IISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSS 325
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 972 TYGSXHGYNNYGSXATY 1022
TYGS + Y NYGS Y
Sbjct: 57 TYGSSNNYGNYGSSNNY 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,770
Number of Sequences: 5004
Number of extensions: 54840
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 774999420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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