Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B14
         (1399 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   6.9  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   9.1  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 370 DPEVNQVIPHHGSGHQAREVSRAILHLDQDCQ-DPEVNQVILHHGSGHQALEVNRAILHQ 546
           D   N V+  +GSG      +   +  D+     PE  Q +LH G+G +A+     I+  
Sbjct: 24  DKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQALLHEGTGPRAMSAYVEIIFD 83

Query: 547 YRD 555
             D
Sbjct: 84  NSD 86


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +1

Query: 625 RAIPHQDLGYQDL*ANQAILHQYRDCQDLEVSRAILRLDQDCQDLEVSQ 771
           R IPH  L  +D     A  HQ R   D E SRA++R ++    LEV Q
Sbjct: 839 RLIPHPLLIKED-----ARCHQ-RYLADPEASRAVIRREERAVTLEVWQ 881


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,156
Number of Sequences: 2352
Number of extensions: 15345
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 161745210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)